Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq20 100 5e-16 seq19 100 5e-16 seq1589 96.9 6e-15 seq21 91.5 3e-13 >seq20 Length=55201332 Score = 100 bits (110), Expect = 5e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||| |||||||| ||||| ||| || || ||||| | || |||| Sbjct 29495020 TGGTGGCCTTTGCTGCAGTGGAGGGAATCTTCTTCTCTGGGTCTTTTGCTTCTATTTTCT 29494961 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||| ||| || ||||||| |||||| || || ||| ||||| ||||| |||||||| Sbjct 29494960 GGCTAAAGAAG-AGGGGACTCATGCCTGGACTCACCTTCTCCAATGAGCTGATCAGCAGA 29494902 Query 26002 GACGAGG 26008 || |||| Sbjct 29494901 GATGAGG 29494895 >seq19 Length=48449771 Score = 100 bits (110), Expect = 5e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||| |||||||| ||||| ||| || || ||||| | || |||| Sbjct 47567428 TGGTGGCCTTTGCTGCAGTGGAGGGAATCTTCTTCTCTGGGTCTTTTGCTTCTATTTTCT 47567369 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||| ||| || ||||||| |||||| || || ||| ||||| ||||| |||||||| Sbjct 47567368 GGCTAAAGAAG-AGGGGACTCATGCCTGGACTCACCTTCTCCAATGAGCTGATCAGCAGA 47567310 Query 26002 GACGAGG 26008 || |||| Sbjct 47567309 GATGAGG 47567303 Score = 96.9 bits (106), Expect = 6e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || |||||| ||||||| ||||| || ||||| ||||| |||||| || || ||||| Sbjct 32919115 GGTGAGCGGTTGGTAGCGTTTGCAGCAGTGGAAGGCATTTTTTTCTCAGGATCATTTGCT 32919056 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 ||||||| ||| | ||| | ||| || | ||||| || || || ||||| ||||| Sbjct 32919055 GCCATCTATTGGTTAAAGAA-AAGAGGCCTGATGCCTGGACTCACCTACTCCAATGAGCT 32918997 Query 25992 CATCAGCAGGGACGAGG 26008 ||||||||| ||||||| Sbjct 32918996 CATCAGCAGAGACGAGG 32918980 >seq1589 Length=338889 Score = 96.9 bits (106), Expect = 6e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || |||||| ||||||| ||||| || ||||| ||||| |||||| || || ||||| Sbjct 55765 GGTGAGCGGTTGGTAGCGTTTGCAGCAGTGGAAGGCATTTTTTTCTCAGGATCATTTGCT 55706 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 ||||||| ||| | ||| | ||| || | ||||| || || || ||||| ||||| Sbjct 55705 GCCATCTATTGGTTAAAGAA-AAGAGGCCTGATGCCTGGACTCACCTACTCCAATGAGCT 55647 Query 25992 CATCAGCAGGGACGAGG 26008 ||||||||| ||||||| Sbjct 55646 CATCAGCAGAGACGAGG 55630 >seq21 Length=45934066 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || || || ||||| || || ||||| | ||| | ||| ||| |||| || ||| Sbjct 30773341 ACCTGAAACTCTCCAGACAGGACCCTGCGGGTGTAGATGTTGCTGGTGTACGGCTCAATG 30773400 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 |||||||||||||| |||||||| ||| ||| |||||||| || |||| ||||||| Sbjct 30773401 GATTCGTTGTTGCCCAGAATCTGAGCTGTGGAGGCAGTGGGCATTGGGGCCAGCAGCAGA 30773460 Query 221243 CTGTTGCGCA 221252 ||||| |||| Sbjct 30773461 CTGTTACGCA 30773470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928822472893120