Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq25 150 2e-31 >seq25 Length=37502051 Score = 150 bits (166), Expect = 2e-31 Identities = 185/253 (73%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 160699 GCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGT 160758 |||| ||| |||||| || | ||| || || || || |||||| ||||| | ||| Sbjct 34279388 GCAGATCCTGCATGCAGTTCACATCCGCTTGAACTCGAGACCAGGAGGCGTAGATCACGC 34279447 Query 160759 TCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCA 160818 |||||| ||| ||||||||||| || ||| ||| || |||||||| | ||| || Sbjct 34279448 TCTCTAATTTGCTGGCCACAAACACATTAGGGAAGCAGGACACGATGGCATTCACGGCTT 34279507 Query 160819 GAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGT 160878 || |||| | ||| ||||||||| ||||| |||| || ||||| |||| Sbjct 34279508 CTCTAAAGATCTGCGGAGACTTCATGTCCACGTGGACGCAGTACACATTTTGAGGAGCGT 34279567 Query 160879 AGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGG 160938 | || |||||||| | ||| ||||||||||| || |||| ||||||||| || ||||||| Sbjct 34279568 AAATCGCCCTGAGGAGCCTTTCGAACATCTCGATTTTATCATGGATCACCATTGAGTAGG 34279627 Query 160939 CTATCGGAAACTC 160951 | || ||||| || Sbjct 34279628 CGATAGGAAAATC 34279640 Score = 125 bits (138), Expect = 8e-24 Identities = 201/288 (70%), Gaps = 3/288 (1%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 |||||| || || || || |||||||| || | ||||| | || |||||||| Sbjct 34278795 GTCGAACTTGTTCGCTAAAAGATGGTGTTGCCTC---ACAATCCATTTCAGGTCTCCGGC 34278851 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| ||||||| || || ||| |||||| ||| |||| || |||||| |||| || | Sbjct 34278852 ACCGTACACGCACACCGATCGTCTGTGCATCCCGGTGCATGGTGGGTACGGAGCGCCGCT 34278911 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | || ||||| | ||| ||||||||| | | || ||||| | |||||| || Sbjct 34278912 GTTTAAATCTCCTTCATGGTAGCTCCACTTCACCAGGCGAGCGATCGCGTTCATGTCCGA 34278971 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 |||||||||| | | | || || ||||| ||||| |||||||| || Sbjct 34278972 CTGCTCGTATTTGTTGTTGGGAGAGTTGGATCCTGGAACCGAAGGCATCCGCTGTAGCGT 34279031 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 ||||||| ||||||||| || ||||||||||| || ||| ||||| Sbjct 34279032 CGCCCACATGTGTTCGTCAGGACTGTACGTGTCTTTCTCCCACTCCAT 34279079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577205325093480