Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq21 91.5 2e-13 seq20 84.2 3e-11 seq19 84.2 3e-11 >seq21 Length=45934066 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 75830 TATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTAT 75888 ||||| ||||||| ||||| || ||| || || | | | | ||||| | || || Sbjct 30779041 TATGAGCAGGAGGGCAGAGCGAA-GCGTGTGGTTAAGGCTCAGCAGCTTTGGTATGCCAT 30778983 Query 75889 TCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAA 75948 || | || ||||| ||||| || |||||||| ||||||||||| || || || ||| Sbjct 30778982 CATCGAGTCTCAGACTGAGACCGGCACACCATACATGCTTTACAAAGACGCCTGCAACCG 30778923 Query 75949 GAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTT 76008 ||||| ||||| |||| |||| || ||||| || ||| | ||||| || ||| | Sbjct 30778922 CAAGAGCAACCAGCAGAACCTGGGCACCATCAAATGCAGCAATTTGTGCACAGAGATTGT 30778863 Query 76009 AGAGTACAC 76017 |||||||| Sbjct 30778862 TGAGTACAC 30778854 >seq20 Length=55201332 Score = 84.2 bits (92), Expect = 3e-11 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 65101 GTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTTGAAGAAGCGGGG 65159 |||||||| ||||||||||| ||||| || ||| |||||| ||| | |||||| |||| Sbjct 29495003 GTGGAGGGAATCTTCTTCTCTGGGTC-TTTTGCTTCTATTTTCTGGCTAAAGAAGAGGGG 29494945 Query 65160 TCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGG 65209 |||||||| || || |||||| ||||| || || | ||||||||| Sbjct 29494944 ACTCATGCCTGGACTCACCTTCTCCAATGAGCTGATCAGCAGAGATGAGG 29494895 >seq19 Length=48449771 Score = 84.2 bits (92), Expect = 3e-11 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 65101 GTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTTGAAGAAGCGGGG 65159 |||||||| ||||||||||| ||||| || ||| |||||| ||| | |||||| |||| Sbjct 47567411 GTGGAGGGAATCTTCTTCTCTGGGTC-TTTTGCTTCTATTTTCTGGCTAAAGAAGAGGGG 47567353 Query 65160 TCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGG 65209 |||||||| || || |||||| ||||| || || | ||||||||| Sbjct 47567352 ACTCATGCCTGGACTCACCTTCTCCAATGAGCTGATCAGCAGAGATGAGG 47567303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596555259958240