Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1136 86.0 9e-12 seq5 84.2 3e-11 >seq1136 Length=355867 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| ||||||| ||||| ||||| || || || | || || || | Sbjct 321687 ATGCAGATTTTTGTTAAAACCTTGACAGGAAAGACCATCACCCTCGAGGTAGAGCCAAGT 321746 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||||| ||||| ||||||||||| || || || || Sbjct 321747 GACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 321806 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| ||||| ||||| |||||| | |||| | || || || || Sbjct 321807 CAGAGGTTGATCTTTGCTGGTAAACAGCTAGAAGATGGCCGAACCCTGTCTGACTACAAC 321866 Query 156003 AT 156004 || Sbjct 321867 AT 321868 >seq5 Length=72500376 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || ||||||| ||||| ||||| || || || | || ||||| | Sbjct 42095692 ATGCAGATTTTCGTTAAAACCTTGACAGGAAAGACCATCACCCTTGAGGTCGAGCCAAGT 42095751 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||||| ||||| ||||||||||| || || || || Sbjct 42095752 GACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 42095811 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | ||| ||||| ||||| |||||| Sbjct 42095812 CAGAGGTTGATCTTTGCTGGTAAACAGCTAGAAGAT 42095847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731854407626800