Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1136 104 4e-17 seq5 96.9 6e-15 >seq1136 Length=355867 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || || || || || || | ||| || || | |||||| || || || || Sbjct 321232 ATGCCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCG 321173 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || || | ||||| ||||||||||| |||||||| |||||||| Sbjct 321172 GACAGGGTGCGTCCATCTTCTAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGG 321113 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| || || || || || || | ||| Sbjct 321112 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCT 321053 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || || || || || |||| ||| |||||||| Sbjct 321052 ACCTCGAGAGTTATGGTCTTTCCTGTCAAGGTCTTAACGAAGATCTGCAT 321003 Score = 96.9 bits (106), Expect = 6e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171867 TGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGT 171926 || ||||||| |||||| || || || || || | | ||| | || || | ||| Sbjct 321889 TGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCTTCTAGCTGT 321830 Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||||||||| || || ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 321829 TTACCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGGATTTTG 321770 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || || || || || || | ||||| || || || ||||| || || || Sbjct 321769 GCCTTGACGTTCTCAATGGTGTCACTTGGCTCTACCTCGAGGGTGATGGTCTTTCCTGTC 321710 Query 172047 AATGTTTTAATGAATATCTGCAT 172069 || ||||||| || |||||||| Sbjct 321709 AAGGTTTTAACAAAAATCTGCAT 321687 >seq5 Length=72500376 Score = 96.9 bits (106), Expect = 6e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171867 TGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGT 171926 || ||||||| |||||| || || ||||| || || | || | || || | ||| Sbjct 42096122 TGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGACAAGGTGCGGCCATCTTCTAGCTGT 42096063 Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||||||||| || || ||||| |||||||| || || |||||||| || || ||||| Sbjct 42096062 TTACCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATTTTG 42096003 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || ||||| || || || | ||||| || || || ||||| || || || Sbjct 42096002 GCCTTGACATTCTCAATGGTGTCGCTTGGCTCTACCTCAAGGGTGATGGTCTTTCCTGTC 42095943 Query 172047 AATGTTTTAATGAATATCTGCAT 172069 || || || | ||| |||||||| Sbjct 42095942 AAGGTCTTGACGAAGATCTGCAT 42095920 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||||||| || | || | ||| || || | |||||| || || || || Sbjct 42094553 ATGCCTCCTCTAAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCG 42094494 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | ||||| |||||||| || || ||||| |||||||| Sbjct 42094493 GACAGGGTGCGGCCATCTTCTAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGG 42094434 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| || || || || || || | ||| Sbjct 42094433 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTTGGCTCT 42094374 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || |||||||||||||| | ||||| | || |||||||| Sbjct 42094373 ACCTCGAGGGTGATGGTTTTACCAGTAAGGGTTTTGACAAAGATCTGCAT 42094324 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 |||||||||||||| || || ||||| |||||||| || || |||||||| ||||| ||| Sbjct 42095837 TGTTTACCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGGATT 42095778 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || || || || || || | || || || || || ||||| || || Sbjct 42095777 TTGGCCTTGACGTTCTCAATGGTGTCACTTGGCTCGACCTCAAGGGTGATGGTCTTTCCT 42095718 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||||| ||| |||||||| Sbjct 42095717 GTCAAGGTTTTAACGAAAATCTGCAT 42095692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905114242793400