Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq20 113 4e-20 seq1136 89.7 4e-13 seq5 86.0 5e-12 >seq20 Length=55201332 Score = 113 bits (124), Expect = 4e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377 ||||| || || |||||||| || ||||||| |||||||||||| ||||| ||||| ||| Sbjct 18706391 TCAGTTTCAGGATTGTCACACTCGGGACACAGCACAAACTTGCGAATGAATCCATCCAGC 18706332 Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437 | ||| || | || | || || || || ||||||||| | || || || ||| || Sbjct 18706331 ATGTCTTGCAGTTTGTTTGCCTCATGAGATCCATTGACGATGTAGCGGTCATTCTTGGAA 18706272 Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 |||| ||| ||||| || |||| ||| || || ||| | || || || Sbjct 18706271 TCGAACTGAGTTTGGGCTCCCAACTCACAACCAAAGAATTTGGTGGG 18706225 >seq1136 Length=355867 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| || || || || ||||| ||| |||| ||||| Sbjct 321687 ATGCAGATTTTTGTTAAAACCTTGACAGGAAAGACCATCACCCTCGAGGTAGAGCCAAGT 321746 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || || || |||||||||||| | ||| || || Sbjct 321747 GACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 321806 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| ||||||||||| || |||| | |||| || | || |||||| Sbjct 321807 CAGAGGTTGATCTTTGCTGGTAAACAGCTAGAAGATGGCCGAACCCTGTCTGACTACAAC 321866 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || ||||| ||||| |||||| | ||| | | || ||||| || Sbjct 321867 ATCCAGAAAGAGTCTACTTTGCACCTTGTGCTGCGTCTCCGAGGAGG 321913 >seq5 Length=72500376 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || || || || || ||||| ||| | || ||||| | Sbjct 42095920 ATGCAGATCTTCGTCAAGACCTTGACAGGAAAGACCATCACCCTTGAGGTAGAGCCAAGC 42095979 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || || || |||||||||||| | ||| || || Sbjct 42095980 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 42096039 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| ||||||||||| || |||| | | || || | ||||||||| Sbjct 42096040 CAGAGGTTGATCTTTGCTGGTAAACAGCTAGAAGATGGCCGCACCTTGTCTGATTACAAC 42096099 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || ||||| ||||| |||||| | ||| | | || ||||| || Sbjct 42096100 ATCCAGAAAGAGTCTACTTTGCACCTTGTGCTGCGTCTCCGAGGAGG 42096146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412831924412039