Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1136 98.7 8e-16 seq5 82.4 6e-11 >seq1136 Length=355867 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| ||||| || ||||| || ||||| ||| |||| ||| | | Sbjct 321687 ATGCAGATTTTTGTTAAAACCTTGACAGGAAAGACCATCACCCTCGAGGTAGAGCCAAGT 321746 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || || || || ||||||||| | ||| || ||| Sbjct 321747 GACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 321806 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| ||||||||||| || || | | ||| || | ||||||||| Sbjct 321807 CAGAGGTTGATCTTTGCTGGTAAACAGCTAGAAGATGGCCGAACCCTGTCTGACTACAAC 321866 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || || |||||||| |||||| | ||| || | | ||||| || Sbjct 321867 ATCCAGAAAGAGTCTACTTTGCACCTTGTGCTGCGTCTCCGAGGAGG 321913 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| ||||| || ||||| || ||||| ||| |||| ||| | || Sbjct 320547 ATGCAGATCTTTGTAAAAACCTTGACAGGAAAGACCATCACCCTCGAGGTAGAGCCAAGC 320606 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || || || || ||||||||| | ||| || ||| Sbjct 320607 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 320666 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || |||||||| || || | | || || | ||||||||| Sbjct 320667 CAGAGGTTAATCTTTGCTGGCAAACAGCTAGAAGATGGCCGCACCCTGTCTGACTACAAC 320726 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || || ||||| || ||||| |||||||| Sbjct 320727 ATCCAGAAAGAGTCCACCTTGCATCTGGTGTTG 320759 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| ||||| || ||||| || ||||| ||| |||| ||| | || Sbjct 320319 ATGCAGATCTTTGTAAAAACCTTGACAGGAAAGACCATAACCCTCGAGGTAGAGCCAAGC 320378 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || || || || ||||||||| | ||| || ||| Sbjct 320379 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 320438 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || |||||||| || || | | || || | ||||||||| Sbjct 320439 CAGAGGTTGATCTTTGCTGGCAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAC 320498 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || || ||||| || ||||| ||||| || Sbjct 320499 ATCCAGAAAGAGTCCACCTTGCATCTGGTGCTG 320531 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| ||||| || ||||| || ||||| ||| |||| ||| | || Sbjct 321231 ATGCAGATCTTTGTAAAAACCTTGACAGGAAAGACCATCACCCTCGAGGTAGAGCCAAGC 321290 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || || || || ||||||||| | ||| || ||| Sbjct 321291 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 321350 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || |||||||| || || | | || || | ||||||||| Sbjct 321351 CAGAGGTTGATCTTTGCCGGCAAACAGCTAGAAGATGGCCGCACCCTGTCTGACTACAAC 321410 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || || ||||| || ||||| ||||| || Sbjct 321411 ATCCAGAAAGAGTCCACCTTGCATCTGGTGCTG 321443 >seq5 Length=72500376 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || || ||||| || ||||| ||| |||| ||| | || Sbjct 42068087 ATGCAGATCTTCGTAAAGACCTTGACAGGAAAGACCATCACCCTCGAGGTAGAGCCAAGC 42068146 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || || || || ||||||||| | ||| || ||| Sbjct 42068147 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 42068206 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || ||||||||||| || | | || || | ||||||||| Sbjct 42068207 CAGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCTTGTCTGACTACAAC 42068266 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || || ||||| || ||||| |||||||| Sbjct 42068267 ATCCAGAAAGAGTCCACATTGCATCTGGTGTTG 42068299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398867451698947