Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09]
1,923 sequences; 1,679,203,469 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq5 89.7 8e-13
seq1136 87.8 3e-12
>seq5
Length=72500376
Score = 89.7 bits (98), Expect = 8e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | || || || |||||||| || || || |||| ||||| | | ||
Sbjct 42095921 TGCAGATCTTCGTCAAGACCTTGACAGGAAAGACCATCACCCTTGAGGTAGAGCCAAGCG 42095980
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | ||||| || ||||| || |||||||||||||| || || || |
Sbjct 42095981 ACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCTGACCAGC 42096040
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || | || ||||| |||||||| |||| ||| | || || | ||||| || |
Sbjct 42096041 AGAGGTTGATCTTTGCTGGTAAACAGCTAGAAGATGGCCGCACCTTGTCTGATTACAACA 42096100
Query 146212 TACAAAAAGAATCGACT 146228
| || ||||| || |||
Sbjct 42096101 TCCAGAAAGAGTCTACT 42096117
Score = 84.2 bits (92), Expect = 3e-11
Identities = 164/241 (68%), Gaps = 1/241 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| |||| || || |||||||| || || || | || ||||| | | ||
Sbjct 42068088 TGCAGATCTTCGTAAAGACCTTGACAGGAAAGACCATCACCCTCGAGGTAGAGCCAAGCG 42068147
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | || || || ||||| || |||||||||||||| || || || |
Sbjct 42068148 ACACCATTGAGAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCTGACCAGC 42068207
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || | || ||||| || ||||| | || ||| | || || | || || || |
Sbjct 42068208 AGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCTTGTCTGACTACAACA 42068267
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATTGA 146271
| || ||||| || || | ||| | || || || | ||||| |||| | |||| ||||
Sbjct 42068268 TCCAGAAAGAGTCCACATTGCATCTGGTGTTGCGTCTCAGAGGTGGTACAAAAAT-TTGA 42068326
Query 146272 A 146272
|
Sbjct 42068327 A 42068327
Score = 84.2 bits (92), Expect = 3e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || ||||||| || |||||||| || || || | || ||||| | | ||
Sbjct 42095237 TGCAGATCTTTGTAAAAACCTTGACAGGAAAGACCATCACCCTCGAGGTAGAGCCAAGCG 42095296
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | ||||| || ||||| ||| |||||||||||||| || || || |
Sbjct 42095297 ACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAGC 42095356
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || | || ||||| || ||||| |||| ||| | || || | || || || |
Sbjct 42095357 AGAGGTTGATCTTTGCTGGCAAACAGCTAGAAGATGGCCGCACCCTATCTGACTACAACA 42095416
Query 146212 TACAAAAAGAATCGAC 146227
| || ||||| || ||
Sbjct 42095417 TCCAGAAAGAGTCCAC 42095432
>seq1136
Length=355867
Score = 87.8 bits (96), Expect = 3e-12
Identities = 155/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | || || || |||||||| || || ||| | || ||||| | | ||
Sbjct 321004 TGCAGATCTTCGTTAAGACCTTGACAGGAAAGACCATAACTCTCGAGGTAGAGCCAAGCG 321063
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | || || || ||||| ||| |||||||||||||| || || || |
Sbjct 321064 ACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAGC 321123
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| ||| | |||||||| || ||||| |||| ||| | || | | || || || |
Sbjct 321124 AGAGATTGATTTTTGCTGGCAAACAGCTAGAAGATGGACGCACCCTGTCCGACTACAACA 321183
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
| || ||||| || || | ||| | || || || | || |||||
Sbjct 321184 TCCAGAAAGAGTCCACCTTGCATCTGGTGTTGCGTCTCAGGGGAGG 321229
Score = 84.2 bits (92), Expect = 3e-11
Identities = 154/226 (68%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || ||||||| || |||||||| || || || | || ||||| | | ||
Sbjct 320320 TGCAGATCTTTGTAAAAACCTTGACAGGAAAGACCATAACCCTCGAGGTAGAGCCAAGCG 320379
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | ||||| || ||||| ||| |||||||||||||| || || || |
Sbjct 320380 ACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAGC 320439
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || | || ||||| || ||||| |||| ||| | || | | || || || |
Sbjct 320440 AGAGGTTGATCTTTGCTGGCAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAACA 320499
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
| || ||||| || || | ||| | || | || | ||||||||
Sbjct 320500 TCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTTAGAGGAGG 320545
Score = 84.2 bits (92), Expect = 3e-11
Identities = 154/226 (68%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || ||||||| || |||||||| || || || | || ||||| | | ||
Sbjct 320548 TGCAGATCTTTGTAAAAACCTTGACAGGAAAGACCATCACCCTCGAGGTAGAGCCAAGCG 320607
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | ||||| || ||||| ||| |||||||||||||| || || || |
Sbjct 320608 ACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAGC 320667
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || | || ||||| || ||||| |||| ||| | || | | || || || |
Sbjct 320668 AGAGGTTAATCTTTGCTGGCAAACAGCTAGAAGATGGCCGCACCCTGTCTGACTACAACA 320727
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
| || ||||| || || | ||| | || || || | || |||||
Sbjct 320728 TCCAGAAAGAGTCCACCTTGCATCTGGTGTTGCGTCTCAGGGGAGG 320773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786147502525160
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |