Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq25 127 2e-24 >seq25 Length=37502051 Score = 127 bits (140), Expect = 2e-24 Identities = 223/322 (69%), Gaps = 2/322 (1%) Strand=Plus/Plus Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713 |||||| |||| ||| ||||| ||||||||| || | | ||| |||||| || Sbjct 34279320 ATTGGTTTTAATGGGGAAGTCCGTGCCGCAGGTGTTCAGCAGATACCTCCACTGCACTG- 34279378 Query 162714 GAG-TCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGT 162772 ||| | | ||||||||| | ||||||| ||| || || || ||| ||| || |||| Sbjct 34279379 GAGATTTGAGCAGATCCTGCATGCAGTTCACATCCGCTTGAACTCGAGACCAGGAGGCGT 34279438 Query 162773 ACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCA 162832 | | |||||||| || | |||| ||||| ||||| ||| || || || || | Sbjct 34279439 AGATCACGCTCTCTAATTTGCTGGCCACAAACACATTAGGGAAGCAGGACACGATGGCAT 34279498 Query 162833 TCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCT 162892 ||||||| | || ||| | | ||| | || ||||| |||||||| | ||| | Sbjct 34279499 TCACGGCTTCTCTAAAGATCTGCGGAGACTTCATGTCCACGTGGACGCAGTACACATTTT 34279558 Query 162893 GAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGA 162952 |||| ||||| || ||||| || | || ||||||||||| || |||| || | ||| | Sbjct 34279559 GAGGAGCGTAAATCGCCCTGAGGAGCCTTTCGAACATCTCGATTTTATCATGGATCACCA 34279618 Query 162953 TAGAATACGCTATGGGGAACTC 162974 | || || || || || || || Sbjct 34279619 TTGAGTAGGCGATAGGAAAATC 34279640 Score = 107 bits (118), Expect = 2e-18 Identities = 199/291 (68%), Gaps = 11/291 (4%) Strand=Plus/Plus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 |||||||||||||| || || || || | | ||| ||||| || || || || | Sbjct 34278796 TCGAACTTGTTCGCTAAAAGATGGTG---TTGCCTCACAATCCATTTCAGGTCTCCGGCA 34278852 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 ||| |||||||||| || || ||||| ||| |||| || || ||| | || || | Sbjct 34278853 CCGTACACGCACACCGATCGTCTGTGCATCCCGGTGCATGGTGGGTACGGAGCGCCGCTG 34278912 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 | | ||| || || | ||| |||||| || | | || ||| || | |||||| || Sbjct 34278913 TTTAAATCTCCTTCATGGTAGCTCCACTTCACCAGGCGAGCGATCGCGTTCATGTCCGAC 34278972 Query 162301 GTGTCGTACTTGTACACTGACGGCA----CGGCTCCAGGAACACCCGGCAGTCTCTGTAG 162356 ||||| |||| || || | || ||| ||||| |||| | |||||| Sbjct 34278973 TGCTCGTATTTGT----TGTTGGGAGAGTTGGATCCTGGAACCGAAGGCATCCGCTGTAG 34279028 Query 162357 AGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCAT 162407 || ||||||| ||||||||| ||||| ||||| || ||| ||||||||| Sbjct 34279029 CGTCGCCCACATGTGTTCGTCAGGACTGTACGTGTCTTTCTCCCACTCCAT 34279079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578418095940800