Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1589 89.7 1e-12 seq19 89.7 1e-12 >seq1589 Length=338889 Score = 89.7 bits (98), Expect = 1e-12 Identities = 77/93 (83%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 132089 AAGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAA-TGCTGACTCTAT 132147 ||||||||| | ||||||||||| || ||||||||| |||||||| |||| ||| || Sbjct 55310 AAGGAGTTTCTCACAGAAGCTTTACCAGTCAATTTGATCGGGATGAACTGCTCTCTC-AT 55252 Query 132148 GAAGGAGTACATTGAATTCGTTGCTGATCGTTT 132180 |||| |||||||||| || |||||||| || || Sbjct 55251 GAAGCAGTACATTGAGTTTGTTGCTGACCGCTT 55219 >seq19 Length=48449771 Score = 89.7 bits (98), Expect = 1e-12 Identities = 77/93 (83%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 132089 AAGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAA-TGCTGACTCTAT 132147 ||||||||| | ||||||||||| || ||||||||| |||||||| |||| ||| || Sbjct 32918660 AAGGAGTTTCTCACAGAAGCTTTACCAGTCAATTTGATCGGGATGAACTGCTCTCTC-AT 32918602 Query 132148 GAAGGAGTACATTGAATTCGTTGCTGATCGTTT 132180 |||| |||||||||| || |||||||| || || Sbjct 32918601 GAAGCAGTACATTGAGTTTGTTGCTGACCGCTT 32918569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186783558787003