Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq10 93.3 1e-13 seq1136 91.5 3e-13 seq5 87.8 4e-12 >seq10 Length=45420867 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || ||||||||||| |||||| | || || || |||| Sbjct 44693485 CAGATCTTCGTCAAGACTCTGACAGGAAAAACCATCACTCTTGAGGTCGAGCCCAGTGAC 44693544 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| || ||||||||| || || || || || ||| || Sbjct 44693545 ACCATTGAGAACGTGAAAGCCAA-GATTCAAGATAAGGAGGGCATCCCACCTGACCAGCA 44693603 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || ||||| || || || ||| | ||||||||| | || || |||| |||||| | Sbjct 44693604 GCGTCTGATCTTTGCTGGCAAACAGCTTGAAGATGGACGCACCCTGTCCGACTACAACAT 44693663 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||||||||||| || || || |||||| Sbjct 44693664 CCAGAAAGAGTCCACCCTCCATCTTGTT 44693691 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || |||||||| || || || ||| || ||| || | || |||||||| ||||| Sbjct 44693110 AAAATTCAAGATAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTGATCTTCGCTGGAAAA 44693169 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||||| || |||||| | || || |||| |||||| ||||||||||||| || || ||| Sbjct 44693170 CAGTTAGAGGATGGACGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTCCAC 44693229 Query 206374 CTTGT 206378 || || Sbjct 44693230 CTGGT 44693234 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||||| || || || || |||||| | || |||||| ||| Sbjct 44693257 CAGATCTTTGTGAAGACGCTGACCGGCAAGACCATCACTCTAGAGGTGGAACCAAGCGAC 44693316 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || |||||||| || || || || || ||| || Sbjct 44693317 ACCATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGCATCCCACCTGACCAGCAG 44693376 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| | ||||||||| | || || |||| |||||| | Sbjct 44693377 CGTCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACCCTGTCCGACTACAACATT 44693436 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || ||||| || Sbjct 44693437 CAGAAAGAGTCCACCCTCCACCTGGT 44693462 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || |||||||| ||||||||||| || || ||||| | || Sbjct 44693725 AAGACGCTGACTGGAAAAACCATCACTTTGGAGGTCGAGCCCAGCGACACCATTGAGAAC 44693784 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| || || || || || ||| || | |||||||| Sbjct 44693785 GTCAAGGCTAAAATTCAAGATAAGGAGGGCATCCCACCTGACCAGCAGCGTCTTATCTTT 44693844 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | |||||||| | || || | || || ||| ||||||| ||||| Sbjct 44693845 GCCGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCTGACTATAACATCCAGAAGGAGTCC 44693904 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 44693905 ACCCTCCACCTGGT 44693918 >seq1136 Length=355867 Score = 91.5 bits (100), Expect = 3e-13 Identities = 154/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| ||| ||||| | |||||||| || ||||| | || || || |||| Sbjct 321690 CAGATTTTTGTTAAAACCTTGACAGGAAAGACCATCACCCTCGAGGTAGAGCCAAGT--- 321746 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||||| | || || ||| || || ||||| |||||||| ||| || ||| Sbjct 321747 GACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 321806 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || || | ||||| || || || ||| | |||||||| | || || | || |||||| Sbjct 321807 CAGAGGTTGATCTTTGCTGGTAAACAGCTAGAAGATGGCCGAACCCTGTCTGACTACAAC 321866 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||||||||||| | |||||||| || | || ||| Sbjct 321867 ATCCAGAAAGAGTCTACTTTGCACCTTGTGCTGCGTCTCCGA 321908 >seq5 Length=72500376 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || || || || |||||||| ||| || ||| || || | ||||| || || || Sbjct 42096004 AAAATCCAGGACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCTGGTAAA 42096063 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | |||||||| | || ||| | ||||||||| ||||||||||||||||| | ||| Sbjct 42096064 CAGCTAGAAGATGGCCGCACCTTGTCTGATTACAACATCCAGAAAGAGTCTACTTTGCAC 42096123 Query 206374 CTTGTTTTGAGACTTCGA 206391 ||||| || | || ||| Sbjct 42096124 CTTGTGCTGCGTCTCCGA 42096141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181791681782083