Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 2e-11 >seq5 Length=72500376 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||||||||| || || ||||| | ||||| |||| || | |||||| Sbjct 42094551 CATGCAGATCTTTGTAAAAACCTTGACAGGAAAGACCATCACCCTCGAGGTAG-AGCCAA 42094609 Query 25234 -CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 ||| || || ||| | || || ||||| || ||||| || || || || || | Sbjct 42094610 GCGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCTGACC 42094669 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTA 25350 |||| || | || | | |||||||| || ||||||| | | |||| ||| || Sbjct 42094670 AGCAGAGGTTGATCTTTGCTGGCAAACAGCTAGAAGATGGACGCACCCTGTC--CGACTA 42094727 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || || ||||| |||||| | ||| | ||| | | | |||||||| Sbjct 42094728 CAACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTTAGAGGAGG 42094778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445083701043360