Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq1136 86.0 5e-12 seq5 84.2 2e-11 >seq1136 Length=355867 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||||||||| ||||| || |||||||| ||| | || ||| || | Sbjct 321687 ATGCAGATTTTTGTTAAAACCTTGACAGGAAAGACCATCACCCTCGAGGTAGAGCCAAGT 321746 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || || ||||| |||||||||||| | ||| ||| || Sbjct 321747 GACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 321806 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||| | || | ||| || ||||| |||||||| ||| || || |||||| Sbjct 321807 CAGAGGTTGATCTTTGCTGGTAAACAGCTAGAAGATGGCCGAACCCTGTCTGACTACAAC 321866 Query 106440 ATACAAAAAGAATCTAC 106456 || || ||||| ||||| Sbjct 321867 ATCCAGAAAGAGTCTAC 321883 >seq5 Length=72500376 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||| ||||| || |||||||| ||| | || ||| || || Sbjct 42094780 ATGCAGATCTTTGTAAAAACCTTGACAGGAAAGACCATCACCCTCGAGGTAGAGCCAAGC 42094839 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || || ||||| |||||||||||| | ||| ||| || Sbjct 42094840 GACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 42094899 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||| | || | ||| || ||||| ||||||||| || || ||| |||||| Sbjct 42094900 CAGAGGTTGATCTTTGCTGGAAAACAGTTAGAAGATGGCCGCACCCTGTCCGACTACAAC 42094959 Query 106440 ATACAAAAAGAATCTACACTACAT 106463 || || ||||| || ||| | ||| Sbjct 42094960 ATCCAGAAAGAGTCCACATTGCAT 42094983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402320170777184