Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq10 113 4e-20 >seq5 Length=72500376 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 35534 TGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGC 35593 || || ||| ||| || || ||||||||||| | |||||| || | || || ||||| Sbjct 42096122 TGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGACAAGGTGCGGCCATCTTCTAGCTGT 42096063 Query 35594 TTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTT 35653 ||||| ||||| ||||||| ||||||||| | |||| || || |||||| ||| || Sbjct 42096062 TTACCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATTTTG 42096003 Query 35654 TGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTC 35713 ||| | | | | | |||||||| | || ||||| | ||||| || || || ||| Sbjct 42096002 GCCTTGACATTCTCAATGGTGTCGCTTGGCTCTACCTCAAGGGTGATGGTCTTTCCTGTC 42095943 Query 35714 AAAGTTTTCACAAATATCTGCAT 35736 || || || || || |||||||| Sbjct 42095942 AAGGTCTTGACGAAGATCTGCAT 42095920 >seq10 Length=45420867 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || | || || |||||||| || || || Sbjct 44694357 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAA 44694298 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| ||| ||| ||||| | | Sbjct 44694297 AATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATTTTTGCCTTCACATT 44694238 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | ||||||||| | ||||| || || || || || || || || Sbjct 44694237 CTCAATGGTATCACTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTTAAGGTCTTGAC 44694178 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 44694177 GAAGATCTGCAT 44694166 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||||||||| |||| || ||| || | || || |||||||| || ||||| Sbjct 44693445 CTCTTTCTGAATGTTGTAGTCGGACAGGGTGCGTCCATCTTCAAGCTGCTTGCCAGCAAA 44693386 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAG 35663 |||| ||||||||||| | || | || |||||| | | ||| ||| | ||| | Sbjct 44693385 GATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTAT-CTTGAATTTTAGCCTTGACGT 44693327 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | |||||||| | ||||||||| | ||||| || || || |||| || |||| Sbjct 44693326 TCTCAATGGTGTCGCTTGGTTCCACCTCTAGAGTGATGGTCTTGCCGGTCAGCGTCTTCA 44693267 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 44693266 CAAAGATCTGCAT 44693254 Score = 107 bits (118), Expect = 2e-18 Identities = 165/234 (71%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 35504 TTATTT-CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562 |||||| || ||||| | | || ||||| || | || |||||| || |||||||| Sbjct 44694627 TTATTTGCCGCCACGAAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTA 44694568 Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 |||| || || || | || || |||||||| || || || |||| ||||||||||| Sbjct 44694567 GTCGGACAGAGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 44694508 Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA 35682 | || | || |||||| ||| ||| || ||||| | | | |||||||| | Sbjct 44694507 AGGTGGGATGCCCTCCTTATCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCGCTTGG 44694448 Query 35683 TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||||| | ||||| || || || |||| || || || || |||||||| Sbjct 44694447 TTCCACCTCGAGTGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 44694394 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| |||| || ||| || | || || | ||| || || || || Sbjct 44693217 CTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCTAACTGTTTTCCAGCGAA 44693158 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAG 35663 |||| ||||||||||| | ||||| || |||||| | | ||| ||| | ||| | | Sbjct 44693157 GATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTAT-CTTGAATTTTAGCCTTGACAT 44693099 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | |||||||| | || ||||| | ||||| || ||||| |||| || |||| Sbjct 44693098 TCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTTACCAGTCAGCGTCTTCA 44693039 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 44693038 CAAAGATCTGCAT 44693026 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||| || || | || ||| ||| | || || |||||||| || ||||| Sbjct 44693901 CTCCTTCTGGATGTTATAGTCAGACAGGGTGCGCCCATCTTCAAGCTGCTTGCCGGCAAA 44693842 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAG 35663 || | ||||||||||| | || | || |||||| | | ||| ||| | ||| | Sbjct 44693841 GATAAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTAT-CTTGAATTTTAGCCTTGACGT 44693783 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | |||||||| | || ||||||| ||||| ||||| || |||| || |||| Sbjct 44693782 TCTCAATGGTGTCGCTGGGCTCGACCTCCAAAGTGATGGTTTTTCCAGTCAGCGTCTTCA 44693723 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 44693722 CGAAGATCTGCAT 44693710 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||| || |||| || ||| || | || || |||||||| || ||||| Sbjct 44694129 CTCCTTCTGGATGTTATAGTCGGACAGGGTGCGTCCATCTTCAAGCTGCTTGCCGGCAAA 44694070 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||| || ||||| |||| | Sbjct 44694069 GATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCTTGAATCTTGGCTTTCACGTT 44694010 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || ||||| |||| || ||||| Sbjct 44694009 CTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTACCAGTCAGCGTCTTCAC 44693950 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 44693949 GAAGATCTGCAT 44693938 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| |||| || ||| || | || || ||||| || || ||||| Sbjct 44693673 CTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCAAGCTGTTTGCCAGCAAA 44693614 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||| || ||||| |||| | Sbjct 44693613 GATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCTTGAATCTTGGCTTTCACGTT 44693554 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| ||||| || |||| ||| || || Sbjct 44693553 CTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTTTTTCCTGTCAGAGTCTTGAC 44693494 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 44693493 GAAGATCTGCAT 44693482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450782764048840