Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq20 113 6e-20 seq19 113 6e-20 seq21 98.7 1e-15 seq1589 93.3 6e-14 >seq20 Length=55201332 Score = 113 bits (124), Expect = 6e-20 Identities = 111/142 (78%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | || || || || |||||||||||||| || || | ||| | Sbjct 29494895 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 29494954 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || || | ||||||||| ||||| |||||||| || || ||||| ||||| | Sbjct 29494955 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGG 29495014 Query 39759 CAACAAGTCTCTCTCC-GTAAC 39779 | || | |||||| || ||||| Sbjct 29495015 CCACCACTCTCTCACCTGTAAC 29495036 >seq19 Length=48449771 Score = 113 bits (124), Expect = 6e-20 Identities = 111/142 (78%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | || || || || |||||||||||||| || || | ||| | Sbjct 47567303 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 47567362 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || || | ||||||||| ||||| |||||||| || || ||||| ||||| | Sbjct 47567363 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACTGCAGCAAAGG 47567422 Query 39759 CAACAAGTCTCTCTCC-GTAAC 39779 | || | |||||| || ||||| Sbjct 47567423 CCACCACTCTCTCACCTGTAAC 47567444 Score = 93.3 bits (102), Expect = 6e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| || || | || || || | |||||||||||||| || || | || | Sbjct 32918980 CCTCGTCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTTTCT 32919039 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | |||| | ||||||||||| ||||| || || || |||||||| ||||||||||| | Sbjct 32919040 TTAACCAATAGATGGCAGCAAATGATCCTGAGAAAAAAATGCCTTCCACTGCTGCAAACG 32919099 Query 39759 CAAC 39762 | || Sbjct 32919100 CTAC 32919103 >seq21 Length=45934066 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || ||||||||||| | |||||||| || ||||||||||| || ||||| ||||| ||| Sbjct 30782292 GTGCCCGCATTAAACAGAGTAGGAGAAGCATGAGTGAACCACTTCTCAGACAGCAGGTTG 30782351 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || ||||| ||||| | | || || || |||||| |||| | || | ||||| | Sbjct 30782352 TAGGTTTCGATAGCAGCCGCAATGTCTTCCTTATGAATGCCTACGGACACCCTCATCAGC 30782411 Query 70111 ATATGCTGAGGTCGTTC 70127 |||||||| || || || Sbjct 30782412 ATATGCTGCGGCCGCTC 30782428 >seq1589 Length=338889 Score = 93.3 bits (102), Expect = 6e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| || || | || || || | |||||||||||||| || || | || | Sbjct 55630 CCTCGTCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTTTCT 55689 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | |||| | ||||||||||| ||||| || || || |||||||| ||||||||||| | Sbjct 55690 TTAACCAATAGATGGCAGCAAATGATCCTGAGAAAAAAATGCCTTCCACTGCTGCAAACG 55749 Query 39759 CAAC 39762 | || Sbjct 55750 CTAC 55753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686892288429720