Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7 113 4e-20 seq1589 105 5e-18 seq19 105 5e-18 seq13 100 2e-16 seq20 82.4 6e-11 >seq7 Length=74282399 Score = 113 bits (124), Expect = 4e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || |||||| ||| |||||||||||||| | || ||||| ||| Sbjct 71539653 TGATGGCGCTGCCGCCCTGTCATGCGTTGTGTCAGTTTTACGTGTCGAACGGTGAGTTGT 71539712 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 ||||||| |||| || |||| || ||||| || || || ||||| || ||||| || | Sbjct 71539713 CATGTCAGCTGTACCAGCGATCGGGAGACATCGGTCTCGGTGTCCCATTCAACATCGCCA 71539772 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || ||||| || || ||||| || ||| Sbjct 71539773 GCTACGCCCTGCTGACCTACATGATCGCCCAC 71539804 >seq1589 Length=338889 Score = 105 bits (116), Expect = 5e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || |||||||||| |||||||||||||| || |||||||| ||||| ||||| | |||| Sbjct 55753 GTAGCGTTTGCAGCAGTGGAAGGCATTTTTTTCTCAGGATCATTTGCTGCCATCTATTGG 55694 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAG 44247 ||||||||| |||| |||||||||| | || | || |||||| | || || Sbjct 55693 TTAAAGAAAAGAGGCCTGATGCCTGGACTCACCTACTCCAATGAGCTCATCAG 55641 >seq19 Length=48449771 Score = 105 bits (116), Expect = 5e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || |||||||||| |||||||||||||| || |||||||| ||||| ||||| | |||| Sbjct 32919103 GTAGCGTTTGCAGCAGTGGAAGGCATTTTTTTCTCAGGATCATTTGCTGCCATCTATTGG 32919044 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAG 44247 ||||||||| |||| |||||||||| | || | || |||||| | || || Sbjct 32919043 TTAAAGAAAAGAGGCCTGATGCCTGGACTCACCTACTCCAATGAGCTCATCAG 32918991 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | || |||||||| ||||||||||| ||||| |||||||| || ||| |||| Sbjct 47569056 TTTGTCATTTTCCCAATTCAGTATCATGACATCTGGCAGATGTACAAGAAGGCAGAGGCC 47568997 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||| || || || Sbjct 47568996 TCTTTCTGGACAGCTGAGGAGGT 47568974 >seq13 Length=52186027 Score = 100 bits (110), Expect = 2e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 47227 TTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAAA 47286 ||||||||| ||| |||| || |||||| || | ||||| || ||||||||||||||||| Sbjct 30149618 TTTAGGACTCTATAAAAAGTCTGGGAAATTAGTTTTTCTTGGATTAGACAATGCAGGAAA 30149559 Query 47287 AACGGCATTACTCCACATGCTCAAA 47311 ||| ||||||| |||||||||||| Sbjct 30149558 GACGACATTACTGCACATGCTCAAA 30149534 >seq20 Length=55201332 Score = 82.4 bits (90), Expect = 6e-11 Identities = 109/151 (72%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 44482 CTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAA 44541 ||||| || | || || ||||| || ||||| || ||||||||||| ||||| || || Sbjct 29493346 CTATAGAGTGGAGAATCCTTTTGACTTCATGGAGAACATTTCGTTGGAGGGCAAGACCAA 29493287 Query 44542 CTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCAT---GATAACAAGTGA 44598 ||| || || || || || || || || ||||| ||||| ||||| | ||| | || Sbjct 29493286 CTTCTTCGAGAAGCGAGTGGGCGAGTACCAGCGCATGGGAGTCATGTCGGGAACTACAGA 29493227 Query 44599 CAATAAATTTACTACGGATGAAGATTTCTAA 44629 || | |||||| ||||| ||||| ||| Sbjct 29493226 TAACACTTTTACTCTGGATGCTGATTTTTAA 29493196 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | || |||||||| ||||||||||| ||||| |||||||| || ||| |||| Sbjct 29496644 TTTGTCATTTTCCCAATTCAGTATCATGACATCTGGCAGATGTACAAGAAGGCAGAGGCC 29496585 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||| || || || Sbjct 29496584 TCTTTCTGGACAGCTGAGGAGGT 29496562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446684997615