Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq20 89.7 6e-13 seq19 89.7 6e-13 seq21 82.4 9e-11 >seq20 Length=55201332 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||| || | | ||| || ||||| |||||| || || |||||||| |||| ||||| Sbjct 29494895 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 29494954 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 | | ||||||||| | | ||| || |||||||||||||| |||||||| Sbjct 29494955 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCAC 29495003 >seq19 Length=48449771 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||| || | | ||| || ||||| |||||| || || |||||||| |||| ||||| Sbjct 47567303 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTCTTCT 47567362 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 | | ||||||||| | | ||| || |||||||||||||| |||||||| Sbjct 47567363 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAGAAGAAGATTCCCTCCAC 47567411 >seq21 Length=45934066 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| ||||||| | | || ||||| |||| || || ||||||||| Sbjct 30773374 TAGATGTTGCTGGTGTACGGCTCAATGGATTCGTTGTTGCCCAGAATCTGAGCTGTGGAG 30773433 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 118276 || |||||||| || |||| || || |||||||| Sbjct 30773434 GCAGTGGGCATTGGGGCCAGCAGCAGACTGTTACG 30773468 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 |||||||| | ||| || |||||||| || | || |||||||||| ||||| || Sbjct 30778854 GTGTACTCAACAATCTCTGTGCACAAATTGCTGCATTTGATGGTGCCCAGGTTCTGCTGG 30778913 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||| ||| || || || ||||||||||||||||| || || ||||| || || Sbjct 30778914 TTGCTCTTGCGGTTGCAGGCGTCTTTGTAAAGCATGTATGGTGTGCCGGTCTCAGTCTGA 30778973 Query 118872 GACTTGAGAATAGCCTTCCA 118891 |||| || || || | ||| Sbjct 30778974 GACTCGATGATGGCATACCA 30778993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618420334363880