Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq21 87.8 2e-12 seq20 82.4 9e-11 seq19 82.4 9e-11 >seq21 Length=45934066 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 104888 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGAC 104947 ||| | || || || ||||||| || ||||| || |||||||||||||||||||||||| Sbjct 30778993 TGGTATGCCATCATCGAGTCTCAGACTGAGACCGGCACACCATACATGCTTTACAAAGAC 30778934 Query 104948 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGT 105007 ||||| |||| ||||| || || |||| |||| ||||| | |||| | || Sbjct 30778933 GCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGCACCATCAAATGCAGCAATTTGTGC 30778874 Query 105008 ACAGAAAT 105015 ||||| || Sbjct 30778873 ACAGAGAT 30778866 >seq20 Length=55201332 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGG 94886 || ||||| |||||||||||||| | ||| ||| |||||| ||||| |||||| | || Sbjct 29495003 GTGGAGGGAATCTTCTTCTCTGGGT-CTTTTGCTTCTATTTTCTGGCTAAAGAAGAGGGG 29494945 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 |||||||| || ||| ||||||||| ||||| ||| Sbjct 29494944 ACTCATGCCTGGACTCACCTTCTCCAATGAGCTGATC 29494908 >seq19 Length=48449771 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGG 94886 || ||||| |||||||||||||| | ||| ||| |||||| ||||| |||||| | || Sbjct 47567411 GTGGAGGGAATCTTCTTCTCTGGGT-CTTTTGCTTCTATTTTCTGGCTAAAGAAGAGGGG 47567353 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 |||||||| || ||| ||||||||| ||||| ||| Sbjct 47567352 ACTCATGCCTGGACTCACCTTCTCCAATGAGCTGATC 47567316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583246779868520