Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq21 100 3e-16 seq20 93.3 5e-14 seq19 93.3 5e-14 >seq21 Length=45934066 Score = 100 bits (110), Expect = 3e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19247 ATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACG 19306 |||| || || ||||| | |||||||| ||||||||||||||||||||||| || || Sbjct 30782169 ATGTGTAGTTGCTTCCTGCTTGCTATGAAAGATGACAGCATTGAGGGCATCTATGACACC 30782110 Query 19307 CTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351 || ||| |||| |||| ||||||||||| |||| || |||||| Sbjct 30782109 CTGAAGCAGTGTGCGCTCATCTCCAAGTCTGCCGGTGGCATCGGG 30782065 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || |||||||||||||| | ||||||||||| | ||||| |||||||||||| | Sbjct 30778866 ATCTCTGTGCACAAATTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGG 30778925 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGA 79212 || |||||||| ||||| |||||| || || ||||||||| |||| Sbjct 30778926 TTGCAGGCGTCTTTGTAAAGCATGTATGGTGTGCCGGTCTCAGTCTGA 30778973 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 |||||||| |||| ||||||||||| |||| |||| ||| || || || ||||||||| Sbjct 30782066 CCGATGCCACCGGCAGACTTGGAGATGAGCGCACACTGCTTCAGGGTGTCATAGATGCCC 30782125 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACAT 79757 || || ||| || |||||||| | ||||||||| || |||| Sbjct 30782126 TCAATGCTGTCATCTTTCATAGCAAGCAGGAAGCAACTACACAT 30782169 >seq20 Length=55201332 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| ||||| ||||||||||||||||| || || | ||||||||||||| Sbjct 29495015 GCCTTTGC-TGCAGTGGAGGGAATCTTCTTCTCTGGGTCTTTTGCTTCTATTTTCTGGCT 29494957 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||| | || |||||||| || || | |||||||| |||||||| Sbjct 29494956 AAAGAAGAGGGGACTCATGCCTGGACTCACCTTCTCCAATGAGCTGAT 29494909 >seq19 Length=48449771 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| ||||| ||||||||||||||||| || || | ||||||||||||| Sbjct 47567423 GCCTTTGC-TGCAGTGGAGGGAATCTTCTTCTCTGGGTCTTTTGCTTCTATTTTCTGGCT 47567365 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||| | || |||||||| || || | |||||||| |||||||| Sbjct 47567364 AAAGAAGAGGGGACTCATGCCTGGACTCACCTTCTCCAATGAGCTGAT 47567317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548511614835120