Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq25 136 5e-27 >seq25 Length=37502051 Score = 136 bits (150), Expect = 5e-27 Identities = 232/334 (69%), Gaps = 8/334 (2%) Strand=Plus/Minus Query 13682 GGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTT 13741 |||||| | || ||||| ||||||||||| || |||||||| | || ||||||||||| Sbjct 34279650 GGAAGAAGAGGATTTTCCTATCGCCTACTCAATGGTGATCCATGATAAAATCGAGATGTT 34279591 Query 13742 CGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTC 13801 ||| | ||||| ||||| || ||||| || || || | |||||||||||||||||| Sbjct 34279590 CGAAAGGCTCCTCAGGGCGATTTACGCTCCTCAAAATGTGTACTGCGTCCACGTGGACAT 34279531 Query 13802 CAAGTC-CGGCGACGAGTTCATCCG---GGGCGTCTCGGCCATCGCCAGGTGCTTCCCTA 13857 ||||| | || || || | | | ||| ||||||| |||||||||| Sbjct 34279530 GAAGTCTCCGC----AGATCTTTAGAGAAGCCGTGAATGCCATCGTGTCCTGCTTCCCTA 34279475 Query 13858 ACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGG 13917 | ||| ||||| | | | |||| | |||| ||||||| ||| || || | Sbjct 34279474 ATGTGTTTGTGGCCAGCAAATTAGAGAGCGTGATCTACGCCTCCTGGTCTCGAGTTCAAG 34279415 Query 13918 CCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCA 13977 | || | | ||||||| ||| ||| | || || || |||||||||| ||||| | Sbjct 34279414 CGGATGTGAACTGCATGCAGGATCTGCTCAAATCTCCAGTGCAGTGGAGGTATCTGCTGA 34279355 Query 13978 ACCTGTGCGGGATGGACTTCCCGCTCAAGACCAA 14011 || ||||| | ||||||||| | || ||||| Sbjct 34279354 ACACCTGCGGCACGGACTTCCCCATTAAAACCAA 34279321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658723365556480