Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq7 129 5e-25 >seq7 Length=74282399 Score = 129 bits (142), Expect = 5e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||||||||||||||||| || || || || | | || || || ||||| |||| Sbjct 71539643 GATCTCCCTCTGATGGCGCTGCCGCCCTGTCATGCGTTGTGTCAGTTTTACGTGTCGAAC 71539702 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||| |||| || ||||| || || |||||||||||||| || | || || || ||| Sbjct 71539703 GGTGAGTTGTCATGTCAGCTGTACCAGCGATCGGGAGACATCGGTCTCGGTGTCCCATTC 71539762 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| ||||| || ||||||||||| || Sbjct 71539763 AACATCGCCAGCTACGCCCTGCTGACCTACATGATCGCCCA 71539803 Score = 129 bits (142), Expect = 5e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| || ||||| ||||| || || |||||||| || || || | || Sbjct 71539803 TGGGCGATCATGTAGGTCAGCAGGGCGTAGCTGGCGATGTTGAATGGGACACCGAGACCG 71539744 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||||||||| || || ||||| || |||| ||| || |||| ||||| || || Sbjct 71539743 ATGTCTCCCGATCGCTGGTACAGCTGACATGACAACTCACCGTTCGACACGTAAAACTGA 71539684 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || | | || || || || |||||||||||||||||||| Sbjct 71539683 CACAACGCATGACAGGGCGGCAGCGCCATCAGAGGGAGATC 71539643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448251624892560