Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq7 127 2e-24 >seq7 Length=74282399 Score = 127 bits (140), Expect = 2e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| || || || | ||||||||||||||| || || Sbjct 71539815 AGTCCAGTGATGTGGGCGATCATGTAGGTCAGCAGGGCGTAGCTGGCGATGTTGAATGGG 71539756 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || ||||| || ||||| || || | |||||| ||||| || || | ||| |||| | Sbjct 71539755 ACACCGAGACCGATGTCTCCCGATCGCTGGTACAGCTGACATGACAACTCACCGTTCGAC 71539696 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 |||||||||||||||| ||||| || || || || ||||| ||| Sbjct 71539695 ACGTAAAACTGACACAACGCATGACAGGGCGGCAGCGCCATCAGA 71539651 Score = 111 bits (122), Expect = 1e-19 Identities = 116/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 |||||||||||||| || || || || || ||||| ||||| || |||| | ||| Sbjct 71536935 AAATGCCTCCACTGAAATCCATAAACTGGACCCAGATCTCCTTCCTCCCGATCGGTGAAT 71536876 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || |||| |||| ||| |||||||| ||||| || ||||| ||| | || |||||||| Sbjct 71536875 CCGTTCTTATCCAGAAACTCTCTGGAGCCGTTAGCATCCCAAATCCTCACACCCTTCTCC 71536816 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30167 || || ||||||| |||||| || || |||| Sbjct 71536815 GACAGATCTTTGGCGTTTGTTGAACC-CTGA 71536786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406153680930778