Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1589 87.8 2e-12 seq19 87.8 2e-12 >seq1589 Length=338889 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/133 (75%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 4567 AACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626 ||||| |||||||||| || || || || || | || | ||| ||||| | ||||| | Sbjct 55628 AACCT-CGTCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTT 55686 Query 4627 TTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 | || | |||| | || || |||||||| || || || || |||||||| || || |||| Sbjct 55687 TCTTTAACCAATAGATGGCAGCAAATGATCCTGAGAAAAAAATGCCTTCCACTGCTGCAA 55746 Query 4687 ACGCTACTAATCG 4699 ||||||| || || Sbjct 55747 ACGCTACCAACCG 55759 >seq19 Length=48449771 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/133 (75%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 4567 AACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626 ||||| |||||||||| || || || || || | || | ||| ||||| | ||||| | Sbjct 32918978 AACCT-CGTCTCTGCTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTT 32919036 Query 4627 TTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 | || | |||| | || || |||||||| || || || || |||||||| || || |||| Sbjct 32919037 TCTTTAACCAATAGATGGCAGCAAATGATCCTGAGAAAAAAATGCCTTCCACTGCTGCAA 32919096 Query 4687 ACGCTACTAATCG 4699 ||||||| || || Sbjct 32919097 ACGCTACCAACCG 32919109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427039591425359