Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq21 105 9e-18 >seq21 Length=45934066 Score = 105 bits (116), Expect = 9e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||| ||||| ||||||||||| ||||| || || ||| ||||||| || ||| || Sbjct 30779636 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCGTAAAACAGATCTCTGGCTCTCTGC 30779695 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || || || || ||||||||||| || || || || | ||| ||| ||||||| || Sbjct 30779696 TCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAAGGC 30779755 Query 78123 TCTAGATATATTGCCATAACTCCAGGTC 78150 || || || || || | | |||| |||| Sbjct 30779756 TCCAGGTACATGGCAAAAGCTCCTGGTC 30779783 Score = 89.7 bits (98), Expect = 7e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 77698 AAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757 ||||| |||||||| || ||| || | | ||||| || || | ||| || |||| Sbjct 30778831 AAACTCTTACCTCATCGGCACTGGTGTACTCAACAATCTCTGTGCACAAATTGCTGCATT 30778890 Query 77758 TGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAA 77817 |||| |||||||| || || ||||||||||| ||||| | ||| || ||||| || Sbjct 30778891 TGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCTTTGTAAAGCATGT 30778950 Query 77818 ACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 | || || ||||| ||| |||| || ||||| || Sbjct 30778951 ATGGTGTGCCGGTCTCAGTCTGAGACTCGATGAT 30778984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694652101898720