Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq21 100 4e-16 >seq21 Length=45934066 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 || || ||||| ||||||||||| ||||| || || ||| ||||||| || ||| | Sbjct 30779636 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCGTAAAACAGATCTCTGGCTCTCTGC 30779695 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 || || || || || ||||||||||| |||||||| || | ||| ||| ||||||| || Sbjct 30779696 TCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAAGGC 30779755 Query 76718 TCTAGATATATCGCCATAACACCCGGTC 76745 || || || || || | | | || |||| Sbjct 30779756 TCCAGGTACATGGCAAAAGCTCCTGGTC 30779783 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || |||||||||| |||||||| |||||||||||||| || ||||| || || ||| Sbjct 30782292 GTGCCCGCATTAAACAGAGTAGGAGAAGCATGAGTGAACCACTTCTCAGACAGCAGGTTG 30782351 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||| ||| | || | || || | |||||| ||||| | || | ||||| | Sbjct 30782352 TAGGTTTCGATAGCAGCCGCAATGTCTTCCTTATGAATGCCTACGGACACCCTCATCAGC 30782411 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| || || || Sbjct 30782412 ATATGCTGCGGCCGCTC 30782428 Score = 86.0 bits (94), Expect = 9e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 77348 TTTTTTGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCA 77407 || || || || || || || || || ||||| || | || ||||| || ||||||||| Sbjct 30785003 TTCTTAGTCTCTTTATGCAGGTTAGACACGGCGATGCGGGCTGCTAGGATGGCATAGTCA 30785062 Query 77408 GGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTA 77467 || |||| || ||| |||||| || || || || || | || || | |||| ||| Sbjct 30785063 GGGTGTTTGGTGGTGAGGGTGGCAGCGATCTCAGCAGCCAGTGTGTCCAGCTCTACTGTA 30785122 Query 77468 GTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 ||||| ||| | || || || ||||| || ||||||| Sbjct 30785123 GTAACGCCGCTGTAAAGGCCCTGAATCACCTTCATGG 30785159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712917262839360