Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 2e-11 >seq5 Length=72500376 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| ||||| || || ||||| ||| | || || || ||| Sbjct 42094780 ATGCAGATCTTTGTAAAAACCTTGACAGGAAAGACCATCACCCTCGAGGTAGAGCCAAGC 42094839 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || ||||| |||||||||||| ||||| || || Sbjct 42094840 GACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 42094899 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||| | || | ||| || ||||| || |||||| || || |||| || || Sbjct 42094900 CAGAGGTTGATCTTTGCTGGAAAACAGTTAGAAGATGGCCGCACCCTGTCCGACTACAAC 42094959 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || ||||| || ||| | ||| | ||| ||||||| | || |||| Sbjct 42094960 ATCCAGAAAGAGTCCACATTGCATCTGGTGCTGCGTCTTAGGGGAGGCA 42095008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421801314195448