Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq20 154 2e-32 seq2 113 6e-20 seq5 109 8e-19 >seq20 Length=55201332 Score = 154 bits (170), Expect = 2e-32 Identities = 178/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 8345 GCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCC 8404 || || || || ||| | || ||||| | || || |||||||| || ||||||||| | Sbjct 34122670 GCACTGTTCACAATCTCAAAGCCCACTTTCCCACCAAAGGTGCTTGGTTTCCAGTACTCT 34122729 Query 8405 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGA 8464 ||||| |||||| || |||| || ||||| |||||| | || || |||| ||| | Sbjct 34122730 GGGGAACAGATGGGATTTCCCATAAGTCCTTTAAGGGAGTAGGGCGCACCCATCTCAACC 34122789 Query 8465 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGC 8524 ||| |||| || ||||||||||||| | ||||||||| |||| || || | || ||| Sbjct 34122790 ATGGTCTCCCCAAAGATGGCGTTGGACCTGGGCTTTTCAACCAGCAAACCAGCATAAAGC 34122849 Query 8525 TCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 |||||||| || || |||||||| | | ||||| ||||| || || ||||||||| Sbjct 34122850 TCCACAGCATCCACATCTCCGTACATCTCTTCAAGTTCAGCAGCCATTTCTTTTTCTCCT 34122909 Score = 120 bits (132), Expect = 4e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| | | |||||| ||||| ||| ||| ||| || ||||| Sbjct 34124424 TCACCAATAAGGATGAGCCTTGAGGTCTGAAACAGCCTCTCATCATCCCAGTCAGGATGC 34124483 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || || || || | |||||||| | ||| ||||| | |||||||| |||||||||||| Sbjct 34124484 TCCTGCTTTAGTATGTCGCACACTCGGTTATGTTCACGCAGCCAGATGGTGGCGTACATC 34124543 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 || || || || ||||| ||||| ||||| ||||| ||||| Sbjct 34124544 ATAAGTCCGGGAACCAGCCCAAAGGCCTCATGACCCACAGC 34124584 >seq2 Length=59640629 Score = 113 bits (124), Expect = 6e-20 Identities = 171/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 || ||||| | || ||||| | || || || ||||||||||||||||| | || || Sbjct 20916939 TTAACGATGTCAAATCCCACTTTCCCACCAAATGTGCTGGGCTTCCAGTATTCAGGAGAA 20916998 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 || || | || |||||||||||||||| ||| | ||||| |||| || | || || Sbjct 20916999 CAAATAGCATTTCCCATGAGGCCTTTGAGAGAGTAGGGAGCTCCCATTTCCACCATAGTC 20917058 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCCAC 8529 || || || | | |||||| | || || |||| |||||| || | |||||||| || Sbjct 20917059 TCCCCAAACACAGAGTTGGGTCTGGATTTCTCCA-CAAGAAGGCCAGGATACAGCTCAAC 20917117 Query 8530 AGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGTTTT 8589 || |||| ||||| || || | || | |||||| | || || ||||||||||| Sbjct 20917118 CTTGTCTACGTGACCGTACAGCTCCTTCAGCTGGGCAGCCAGATCTTTGTCTCCTGTTTT 20917177 Query 8590 A 8590 | Sbjct 20917178 A 20917178 Score = 109 bits (120), Expect = 8e-19 Identities = 171/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| |||||||| ||||| | | ||| ||| ||| || |||||| Sbjct 20920908 TCACCAATCAGGATGAGACGAGTGGTTTGGAAGATTCTCTCATCATCCCAGTCAGGATGT 20920967 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || || |||| | || || || | |||||| || | |||||| || || || ||||| Sbjct 20920968 TCCTGCTTCATGATGTCACAGACACGGTTGTGCTCACGGAGCCAAATGGTAGCATACATT 20921027 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 || | || || ||||| ||||| ||||| || || ||||| | | | ||| || Sbjct 20921028 ATCAAACCTGGAACCAGACCAAAGGCCTCATGGCCCACAGCAAATTTCTGCTCTTCCGGG 20921087 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 | | ||||| ||| ||| | |||||||||||| || || || || |||| ||| Sbjct 20921088 ATATGAGGAGGGTAGTGCATCTCCACCTGGACGTCCTTCACAAGCGGAGGGTACACCTCA 20921147 Query 9472 CCGTC 9476 || || Sbjct 20921148 CCATC 20921152 >seq5 Length=72500376 Score = 109 bits (120), Expect = 8e-19 Identities = 171/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || ||||||||||| | | ||||||||| || ||||| |||| ||| |||||||||| Sbjct 64936353 CCTATAATGATGAGCCTGGCGGTCTGGAAGAGCTGCTCATCACCCCAGGTTGGATGTTCT 64936294 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 |||||||| | || ||||| | |||||| || | ||||| | || |||||||| | Sbjct 64936293 TGTTTCAGGATTTCACACACACGGTTGTGCTCACGAAGCCACAAGGTAGCGTACATGCCG 64936234 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCG-GGCAC 9413 ||||| || | ||| || || |||| || |||| |||| || || | | | || || Sbjct 64936233 AGCCCTGGCAGCAGCCCGAACACCTCCTGCCCGATTGCCA-ACTGCTGCTCTGGAGGGAC 64936175 Query 9414 TTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACC 9473 | ||||| || |||| | ||||| | | |||| ||||| || || ||||| Sbjct 64936174 TGATGGAGGGTAACTCATTTTGACCTGTGCATGCCGCACCGTCGGGGGGTAAATATCACC 64936115 Query 9474 GT 9475 || Sbjct 64936114 GT 64936113 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || || ||||||||||||||||| | ||||||||||| || ||||||||||| Sbjct 64946134 CCTCCAAATGTGCTGGGCTTCCAGTAGTCTGGGGAGCAGATAGGATTTCCCATGAGGCCT 64946075 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAA 8478 || ||||| || || ||||||| || | ||||| ||||| || Sbjct 64946074 TTTAGGGAAAAAGGGGCCCCCATTTCCACCATGCTTTCACCAAA 64946031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716859568073920