Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4 484 8e-132 seq8 96.9 4e-15 >seq4 Length=27622843 Score = 484 bits (536), Expect = 8e-132 Identities = 1281/1944 (66%), Gaps = 23/1944 (1%) Strand=Plus/Minus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| ||||| || |||| | | |||||| || | || | || || || ||||| Sbjct 17920084 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTC 17920025 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | ||||| |||||||| | || || || ||||| || || ||||| || | ||| Sbjct 17920024 ACGATCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 17919965 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 17919964 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 17919905 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-AGGTTCCCAATTCCAA-A 53324 | || || || | |||| | ||| || || || || | |||| | |||| | Sbjct 17919904 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGACCTTCC--AGTCCAGCA 17919847 Query 53325 GATCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGA 53382 | || | || | | | || || || || || ||| | || Sbjct 17919846 GGTCGGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGGGA 17919789 Query 53383 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 53442 ||| | || || ||||| || || || |||| || || || |||||||| | || Sbjct 17919788 GCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCAGCCAGCTCGCAGCTCGCCTCCAGGGC 17919729 Query 53443 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAA 53502 |||| || ||||| || ||||| | | || || || || || |||| || || Sbjct 17919728 GGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCAGGGCTTTCGAA 17919669 Query 53503 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 53562 || || | ||| || || |||||||| || || || || || || ||||| || || Sbjct 17919668 CGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGGACGCCGATTCCGATCGGCCT 17919609 Query 53563 ATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 53622 || | ||| || || | || ||||| || | || || || ||||| || ||||| || Sbjct 17919608 GTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTAATTTCGATAATCTT 17919549 Query 53623 ATTGAGGTTTCTGACAATTACTTTGACCACA--TCCTTCAGTTTGAGAAAATCAAATTGT 53680 || | |||| |||| ||||||||| |||| | || ||||| ||| ||||| || Sbjct 17919548 GTTCAAGTTTTTGACGATTACTTTGGTCACAAATGCT--AGTTTTTTAAAGTCAAAA-GT 17919492 Query 53681 CCATCTA----TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTC 53736 || | | || ||||||| | || || || ||||||||||| || |||||||| Sbjct 17919491 CCGCTCAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTACCTC 17919432 Query 53737 ATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 53796 || | | || | | ||| || ||||| || || || | |||||||| || | Sbjct 17919431 ATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAG 17919372 Query 53797 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGT 53856 ||| || || || ||||| |||| || || || || || || ||| | |||||||| || Sbjct 17919371 ATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGT 17919312 Query 53857 TTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTA 53916 ||| ||||||| || ||||| || | ||| || ||||||| | | ||| Sbjct 17919311 TTCTGTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGCTTGAC 17919252 Query 53917 TCTCTTTTCTCTTTCGTATAGTGTATACAATCGT-TCAAACTCGTCTCCCCAAACATTGT 53975 ||| ||| | || ||| || || || | | || ||||| || ||||| | || Sbjct 17919251 CCTCCCTTCCTTCTCATATGTGGTGTA-AAGCTTCTCGAACTCCTCCCCCCAGCACTCGT 17919193 Query 53976 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 54035 ||| ||||| || || | ||||||||||| ||||| ||| || || ||||| | Sbjct 17919192 CCAGCCCAGGGCACTCGTTCGGACACATCAGAGACCAGTCTGTGTTGCTCTCCACTCTCT 17919133 Query 54036 TCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCG 54094 |||| || || || || ||||| | || || ||| || ||||||| || || ||||| Sbjct 17919132 TCATGAACAGGTCTGGGATCCACATGGCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCC 17919074 Query 54095 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154 ||||| || ||||| || || || | ||| | | | ||| | ||||| || |||| | Sbjct 17919073 TTTCCGGTGTTCTTCTTCAGCTCCAAGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGG 17919014 Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214 || |||| | |||| |||| ||||| |||||||| || | ||| | || ||||| Sbjct 17919013 TACATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAGCGCGCAGTGTTG 17918954 Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 54274 || || ||||||| ||| || | | || ||||| || ||||| |||| ||||||| Sbjct 17918953 TTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATATAG 17918894 Query 54275 CTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATT 54334 || || | | | || || | | | || || ||||| ||| || ||||| Sbjct 17918893 CTCCCCGTCGATCTGATGCAGCTGACCGCCACGCCAATTCCCCCGGCCGACTTGGAGATG 17918834 Query 54335 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 54394 | || || | || | ||| || || ||||| || || || || || ||||| || Sbjct 17918833 AGGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGC 17918774 Query 54395 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454 || || ||||| |||| || | | | |||||||| || || | ||||| |||||| Sbjct 17918773 AGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTAGGGGAAGCG 17918714 Query 54455 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCAT 54514 || || ||||| || || || || || ||||||||||| || |||| || || ||| | Sbjct 17918713 TGGGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTGCGTTGATGTCCGTT 17918654 Query 54515 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 54574 | || || || || | || | ||| | ||||||||| || | || | | ||| | Sbjct 17918653 TTGTGGATCCCAACAGATACTCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTGCCG 17918594 Query 54575 TTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 54634 || || |||| || |||||| |||| || || || || || |||| || || || Sbjct 17918593 TTGATCTTCAACAGGTAGGACCGCTCCAGGGTCTTGAACCCGAAGAAGTTATAGGAGAAA 17918534 Query 54635 TCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATG 54694 || || ||| | || || |||||||||| || || | | | ||| | || | Sbjct 17918533 TCGCGGTCGAAGATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGC 17918474 Query 54695 GTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAA 54753 || | ||| || || || ||||| || | ||| || ||||| ||||| | | Sbjct 17918473 GT-CTCCTTGGAGATCATGGGAGAGTGGCGTCTATTCAAGGGGTTGACGTAGTTGTACAG 17918415 Query 54754 ATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTAT 54813 |||| |||||| ||||| || | || || || |||||||| || ||||| ||||| || Sbjct 17918414 GTCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGAT 17918355 Query 54814 TCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGC 54873 | || || || ||||| || || || || | || || ||||| || || || || Sbjct 17918354 CCGTGCAGCGAGGATGGCGTAGTCGGGGTGCTTGGTTGTGAGGGTGGCGGCGATCTCTGC 17918295 Query 54874 TGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 | ||| ||||| | || || ||||| || || | || | || ||||| |||||||| Sbjct 17918294 GGCCAGCGTGTCGAGCTCCACGGTTGTGACGCCGCTGTACAAACCCTGGATCACCTTCAT 17918235 Query 54934 AGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACG 54993 | || | | ||||| | | |||| ||| | || || || | || || || Sbjct 17918234 CGTAATCTGGGTCGGATCCACAAAGTCAGAGTTCAGCCCGTAGCACAGCTTCTGGATGCG 17918175 Query 54994 AGATGTGATTTTATCAAACATGAC 55017 ||| ||||||||||| |||||||| Sbjct 17918174 AGACGTGATTTTATCGAACATGAC 17918151 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||| || || |||||| || | || || || || ||||| | Sbjct 17920912 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCCGCGATGTGGATGT 17920853 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| || || || || ||||||||||| || | |||||||||||| || | | |||| Sbjct 17920852 TCAGGGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCTGCAGCCATCTTGAGTACGGTCT 17920793 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | |||||||| | |||| | ||| || |||| Sbjct 17920792 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCAGGAA 17920742 >seq8 Length=22893611 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| || || | |||||||| || || ||||||||||| ||||| | ||||| Sbjct 22892198 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTTT 22892139 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || || | || || || ||||| ||||| ||||| || || || || |||| Sbjct 22892138 TCAGCCAGAAGATCGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 22892079 Query 24277 C 24277 | Sbjct 22892078 C 22892078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721414462000