Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq10 122 7e-23 seq5 122 7e-23 >seq10 Length=23202889 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | |||||||| || | ||||||||||| || ||||| ||||| | Sbjct 4415852 CCTCCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 4415793 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| || | || || | ||||||||| ||| Sbjct 4415792 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 4415733 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||| || | | | || || | ||||||| Sbjct 4415732 ATGCCCTCCTTGTCCTGGATCTTAGCTTTGACATTTTCAATGGTGTCGCTGGGCTCCACC 4415673 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||| ||| |||||||| || || | || || ||||| || ||||| |||| Sbjct 4415672 TCCAAGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATCTTGA 4415621 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || | ||| | |||||||| || | ||||||||||| || ||||| ||||| Sbjct 4416312 GTTTCCTCCCCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 4416253 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | || || || | || |||||||| ||||| || | || || | ||||||||| Sbjct 4416252 GGAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGG 4416193 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 ||| | ||| ||||| || |||||| ||| || | | | || || | |||||| Sbjct 4416192 GGGGATGCCCTCCTTATCCTGGATCTTAGCTTTGACATTTTCAATGGTGTCGCTGGGCTC 4416133 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | |||| ||| |||||||| || || | |||||||| || || ||||| Sbjct 4416132 CACCTCCAGGGTGATGGTCTTACCAGTGAGGGTTTTGACGAAGATCTGCAT 4416082 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | || || || | || |||||||| || || Sbjct 4416050 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCCAGCTGCTTACCG 4415991 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | ||||||||| ||| | ||| ||||| || |||||| ||| Sbjct 4415990 GCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 4415931 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || || | ||||||| |||| ||| |||||||| || || | ||| Sbjct 4415930 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTGAGGGTT 4415871 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 4415870 TTGACGAAGATCTGCAT 4415854 >seq5 Length=28395245 Score = 122 bits (134), Expect = 7e-23 Identities = 158/217 (73%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 9215849 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 9215908 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| |||||| ||| Sbjct 9215909 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 9215968 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | ||||||| ||||| || | ||| ||||||||||| || | || Sbjct 9215969 ACGTTCTCAATGGTATCACTTGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 9216028 Query 21159 TTGACAAATATTTGCAT-TTTGAATCTCTTATAAATG 21194 |||||||| || ||||| |||| | || | | ||||| Sbjct 9216029 TTGACAAAGATCTGCATGTTTGCACCTGTGAAAAATG 9216065 Score = 122 bits (134), Expect = 7e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 9220537 GTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 9220596 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| |||||| ||| Sbjct 9220597 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 9220656 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | ||||| | |||||| || | ||| ||||||||||| || | || Sbjct 9220657 ACGTTCTCAATGGTATCGCTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 9220716 Query 21159 TTGACAAATATTTGCATTTT 21178 |||||||| || ||||| || Sbjct 9220717 TTGACAAAGATCTGCATGTT 9220736 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 9215393 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 9215452 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| |||||| ||| Sbjct 9215453 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 9215512 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | |||||| |||| ||| ||||||||||| || | || Sbjct 9215513 ACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTC 9215572 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 9215573 TTGACAAAGATCTGCAT 9215589 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 9219853 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 9219912 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| |||||| ||| Sbjct 9219913 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 9219972 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | |||||| |||| ||| ||||||||||| || | || Sbjct 9219973 ACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTC 9220032 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 9220033 TTGACAAAGATCTGCAT 9220049 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 9219625 GTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 9219684 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| |||||| ||| Sbjct 9219685 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 9219744 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | |||||| || | ||| |||||||| ||||| | || Sbjct 9219745 ACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTTACCGGTGAGGGTC 9219804 Query 21159 TTGACAAATATTTGCATT 21176 |||||||| || |||||| Sbjct 9219805 TTGACAAAGATCTGCATT 9219822 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 9220081 GTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 9220140 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| |||||| ||| Sbjct 9220141 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 9220200 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | |||||| || | ||| |||||||| || || | || Sbjct 9220201 ACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTTACCAGTCAGGGTC 9220260 Query 21159 TTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 9220261 TTAACGAAGATCTGCAT 9220277 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 9220309 GTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 9220368 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| |||||| ||| Sbjct 9220369 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 9220428 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | |||||| || | ||| |||||||| || || | || Sbjct 9220429 ACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTTACCAGTCAGGGTC 9220488 Query 21159 TTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 9220489 TTAACGAAGATCTGCAT 9220505 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | ||||| || | || || ||||| ||||| Sbjct 9215621 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCA 9215680 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| |||||| ||| Sbjct 9215681 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 9215740 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | |||||| || | ||| |||||||| || || | || Sbjct 9215741 ACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTTACCAGTCAGGGTC 9215800 Query 21159 TTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 9215801 TTAACGAAGATCTGCAT 9215817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259071342900