Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq10 161 1e-34 seq5 145 8e-30 seq8 114 1e-20 seq23 87.8 2e-12 >seq10 Length=23202889 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| || || ||||||||| | || || || ||| | Sbjct 4416082 ATGCAGATCTTCGTCAAAACCCTCACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 4416141 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||| | || || | || || |||||||||||| | |||||| Sbjct 4416142 GACACCATTGAAAATGTCAAAGCTAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAG 4416201 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||| ||| |||||||||| Sbjct 4416202 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCCGACTACAAC 4416261 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || || || ||| | || ||||||| || Sbjct 4416262 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGTCTGAGGGGAGG 4416308 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || || || ||||||||| | || || || || Sbjct 4415623 AAGATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCTTGGAGGTGGAGCCC 4415682 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||||| | | ||| |||| | || || | ||||| |||||||||||| | ||| Sbjct 4415683 AGCGACACCATTGAAAATGTCAAAGCTAAGATCCAGGACAAGGAGGGCATCCCCCCAGAC 4415742 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | ||||||||| ||||||| Sbjct 4415743 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTAC 4415802 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| |||| || || || ||| | || |||| || || Sbjct 4415803 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGTCTGAGAGGAGG 4415852 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| || || ||||||||| | || || || ||| | Sbjct 4415854 ATGCAGATCTTCGTCAAAACCCTCACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 4415913 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || |||||||||||| | ||||| Sbjct 4415914 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCA 4415972 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || |||||||| || | ||||| ||| ||||||||| Sbjct 4415973 GCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAAGATGGCCGCACTCTCTCCGACTACAA 4416032 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || || ||||| | || || ||| Sbjct 4416033 CATCCAGAAGGAGTCCACCCTCCACCTGGTCTTGCGTCTCAGAGGAGGC 4416081 >seq5 Length=28395245 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || ||||| || || ||||||||| |||| ||||| ||| Sbjct 9219822 AATGCAGATCTTTGTCAAGACCCTCACCGGTAAGACCATCACCCTCGAGGTCGAGCCCAG 9219763 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | |||| | |||| || || | ||||| || ||||| ||| | || | Sbjct 9219762 CGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATC 9219704 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | || |||| || ||||| |||||||| || | ||||||||| ||||||| Sbjct 9219703 AGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACA 9219644 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||| | || || ||||| || |||| ||||||| || Sbjct 9219643 ACATCCAGAAGGAGTCAACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 9219595 Score = 141 bits (156), Expect = 1e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || ||||| ||||| ||||||||| |||| ||||| | Sbjct 9220737 AAACATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGCC 9220678 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || ||| | | | | |||| | |||| || || | ||||| || ||||| ||| | | Sbjct 9220677 CAGCGATACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTG 9220619 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| | || |||| || ||||| |||||||| || | ||||||||| |||| Sbjct 9220618 ATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACT 9220559 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||| |||||| |||| || ||||| || |||| | ||||| || Sbjct 9220558 ACAACATCCAAAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGG 9220507 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || ||||||||| |||| ||||| ||| | Sbjct 9215817 ATGCAGATCTTCGTTAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAGC 9215758 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 9215757 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 9215699 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| ||||| || || | ||||||||| |||||||| Sbjct 9215698 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAA 9215639 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || ||||| || |||| | ||||| ||| Sbjct 9215638 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGGC 9215590 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || ||||||||| |||| ||||| ||| | Sbjct 9220277 ATGCAGATCTTCGTTAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAGC 9220218 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 9220217 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 9220159 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| |||||||| Sbjct 9220158 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 9220099 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| |||||| |||| || ||||| || |||| | ||||| ||| Sbjct 9220098 CATCCAAAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGGC 9220050 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| | Sbjct 9215589 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 9215530 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 9215529 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 9215471 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| |||||||| Sbjct 9215470 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 9215411 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| || |||| ||||||| || Sbjct 9215410 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 9215363 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || ||||| ||| | Sbjct 9220049 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCCAGC 9219990 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 9219989 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 9219931 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| |||||||| Sbjct 9219930 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 9219871 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| || |||| | ||||| || Sbjct 9219870 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGG 9219823 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || ||||||||| |||| ||||| ||| | Sbjct 9220505 ATGCAGATCTTCGTTAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAGC 9220446 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 9220445 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 9220387 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| |||||||| Sbjct 9220386 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 9220327 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| |||||| |||| || ||||| || |||| | ||||| || Sbjct 9220326 CATCCAAAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGG 9220279 Score = 136 bits (150), Expect = 4e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || ||||| ||||| ||||||||| |||| ||||| | Sbjct 9216049 AAACATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGCC 9215990 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | || | | | | |||| | |||| || || | ||||| || ||||| ||| | | Sbjct 9215989 AAGTGATACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTG 9215931 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| | || |||| || ||||| |||||||| || | ||||||||| |||| Sbjct 9215930 ATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACT 9215871 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||||| |||| || ||||| || |||| | ||||| || Sbjct 9215870 ACAACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGG 9215819 >seq8 Length=22893611 Score = 114 bits (126), Expect = 1e-20 Identities = 93/113 (82%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||| || ||||| ||||| ||||| || |||||||| | |||| ||| Sbjct 22890995 GAGCCGCTGCTGAAGGAAAACCCTCGCCGCTTCGTCATCTTCCCCATCAAGTACCACGAC 22891054 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| |||||||||||||| |||||||||| |||||||| Sbjct 22891055 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCTTTCTGGACCGCAGAGGAGGT 22891107 Score = 113 bits (124), Expect = 5e-20 Identities = 102/123 (83%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCT-TGAACGACAACGAGCGCCA 116742 ||||||| |||||||||||| | ||| |||||||| ||| |||| ||| | ||| | | Sbjct 22891257 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGAG-GCTCTGAAGGACGAGGAGAGGTA 22891314 Query 116743 TTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT 116802 |||||| |||||| |||| || |||||||||||||||||||||||||||||||| || Sbjct 22891315 CTTCATCTCTCACGTGTTGGCGTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCT 22891374 Query 116803 GGT 116805 ||| Sbjct 22891375 GGT 22891377 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| ||||||||||||| ||||| ||||| ||||||| || || ||||| Sbjct 22892063 GGTGAGCGCGTGGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCT 22892122 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 || || || ||||| || || | ||||| |||||||| ||||| ||| ||||||||| Sbjct 22892123 GCGATCTTCTGGCTGAAAAAGAGAGGCCTGATGCCCGGACTGACCTTCTCCAACGAGCTG 22892182 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 22892183 ATCAGCAGAGACGAGG 22892198 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||| ||||||||| | ||||| |||| ||||| || || || Sbjct 22891603 GGTGGAGCGCTTCTCCCAGGAAGTGCAGGTGACGGAGGCCAGGTGTTTCTATGGTTTCCA 22891662 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| ||||||| |||| ||| Sbjct 22891663 GATCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTCCTCATCAACACCTAC 22891717 >seq23 Length=22362490 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| | ||||| || || || || ||||| ||||||| || ||| ||||| Sbjct 14674648 GGGGAGCGAATTGTGGCTTTTGCAGCAGTGGAGGGAATCTTCTTCTCCGGCTCATTCGCT 14674707 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| | |||||||||||| | || || ||||| ||||| || | | ||||||||| Sbjct 14674708 GCCATTTATTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTG 14674767 Query 117152 ATCTCCAGGGACGAGG 117167 || |||||| |||| Sbjct 14674768 ATTAGCAGGGATGAGG 14674783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219038994000