Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4 145 7e-30 seq10 125 6e-24 seq5 104 2e-17 >seq4 Length=27622843 Score = 145 bits (160), Expect = 7e-30 Identities = 456/691 (66%), Gaps = 28/691 (4%) Strand=Plus/Minus Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334 ||| | | ||||| || ||||||||||| || ||||| || || | ||||||||||| Sbjct 17919976 GTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATC 17919917 Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394 |||| || || ||| || ||||||| |||| || || || || | ||| Sbjct 17919916 GGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGACCTTC 17919857 Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454 |||||| ||| | | ||| || | ||||| | | | || || | || Sbjct 17919856 CAGTCCAGCAGGTCGGTGGG--------CGTC-TTCTC--CCACAT-GTCGT---ACTGG 17919812 Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514 | || ||| |||| ||||| | | ||||| || ||||| ||| ||| Sbjct 17919811 AGGATGCCCTTGCTGACCGGGGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCAGCC 17919752 Query 133515 AGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATT-GAATAGTTGAC 133573 ||||||||||| ||||||| ||||| |||| ||||| || |||| |||| ||| | Sbjct 17919751 AGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAAT-GTTCA- 17919694 Query 133574 GAACCTG-GCATCGTCGCTATCGTAGGCGATGTCGAGAAGAACAAACGCGTCGGCCAAAC 133632 | | ||| || || ||| ||| | | | | | || | || ||||| ||||||| Sbjct 17919693 GCAGCTGAGCCTCAGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAAC 17919634 Query 133633 CCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTC-GGCCGTG 133691 |||| | ||||| ||||| || | || || ||| | |||||| || ||| || Sbjct 17919633 CCTGGACGCCGATTCCGATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTG 17919574 Query 133692 GGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCA--AAT 133749 || |||| ||| | ||||| |||||||| | || |||||| | ||| |||| ||| Sbjct 17919573 GG-TAGTAGTTAATTTCGATAATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACAAAT 17919515 Query 133750 GTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAA 133809 | | || | ||||||| ||| || | || |||| || |||||| || | Sbjct 17919514 GCT--AGTTTTTTAAAGTCAAAAGTCC--GCTCAGGGGT-GACGTACATGTTGAGCGCGA 17919460 Query 133810 TACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGC 133869 | ||| |||||||| || || ||| | ||| | |||| || || || | || Sbjct 17919459 TGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGC 17919400 Query 133870 AGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGAT 133929 |||||||||||| |||||||||||||| ||| | || ||||| | ||||| | Sbjct 17919399 AGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 17919340 Query 133930 CCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960 | ||||| |||||||||||| |||||||| Sbjct 17919339 CTTTGTACAGCATGTACGGCGTACCGGTTTC 17919309 >seq10 Length=23202889 Score = 125 bits (138), Expect = 6e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| ||| | |||||| ||| || Sbjct 4416291 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTC 4416232 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| ||||||||||| || || || ||||||||||| || Sbjct 4416231 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTG 4416172 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||| || | ||| | |||||| || ||| ||||| | ||| | || || Sbjct 4416171 GATCTTAGCTTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTT 4416112 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || ||||| || || ||||||||| || Sbjct 4416111 ACCAGTGAGGGTTTTGACGAAGATCTGCATGCCT 4416078 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| ||| | ||||| ||| || Sbjct 4415835 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTC 4415776 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||| ||||||||||| || || || |||||||||||||| Sbjct 4415775 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 4415716 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||| || | ||| | |||||| || ||| ||||| | ||| | || || Sbjct 4415715 GATCTTAGCTTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTT 4415656 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| |||||||| Sbjct 4415655 ACCAGTCAGGGTCTTCACAAAGATCTGCAT 4415626 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||| ||||| || ||||| || || |||||||| ||| | |||||| ||| Sbjct 4416066 CAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATC 4416007 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || || ||| |||| ||||||||||| || || || ||||||||||| || Sbjct 4416006 TTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTATC 4415947 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| || ||| ||||| | ||| | || Sbjct 4415946 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 4415887 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| || || |||||||| Sbjct 4415886 CTTACCAGTGAGGGTTTTGACGAAGATCTGCAT 4415854 >seq5 Length=28395245 Score = 104 bits (114), Expect = 2e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| ||||| |||||||| || | ||||| ||| || | Sbjct 9220526 CAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 9220585 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| || | ||||||||| || || ||||| |||||||| | Sbjct 9220586 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 9220645 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | ||| || || ||||||||||| ||| | || |||| Sbjct 9220646 TCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCGACCTCGAGGGTGATGGTCTTGC 9220705 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || || || || ||||| ||||||||| Sbjct 9220706 CAGTGAGGGTCTTGACAAAGATCTGCATG 9220734 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| || | ||||| ||| || | Sbjct 9219614 CAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 9219673 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| || | ||||||||| || || ||||| |||||||| | Sbjct 9219674 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 9219733 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | |||||| || ||||||||||| ||| | || || | Sbjct 9219734 TCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTTAC 9219793 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || || || ||||| |||||||| Sbjct 9219794 CGGTGAGGGTCTTGACAAAGATCTGCAT 9219821 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| ||||| |||||||| || | ||||| ||| || | Sbjct 9220070 CAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 9220129 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| || | ||||||||| || || ||||| |||||||| | Sbjct 9220130 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 9220189 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | |||||| || ||||||||||| ||| | || || | Sbjct 9220190 TCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTTAC 9220249 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || || || |||||||| Sbjct 9220250 CAGTCAGGGTCTTAACGAAGATCTGCAT 9220277 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| ||||| |||||||| || | ||||| ||| || | Sbjct 9220298 CAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 9220357 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| || | ||||||||| || || ||||| |||||||| | Sbjct 9220358 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 9220417 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | |||||| || ||||||||||| ||| | || || | Sbjct 9220418 TCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTTAC 9220477 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || || || |||||||| Sbjct 9220478 CAGTCAGGGTCTTAACGAAGATCTGCAT 9220505 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| || | ||||| ||| || | Sbjct 9215610 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAA 9215669 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| || | ||||||||| || || ||||| |||||||| | Sbjct 9215670 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 9215729 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | |||||| || ||||||||||| ||| | || || | Sbjct 9215730 TCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTTAC 9215789 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || || || |||||||| Sbjct 9215790 CAGTCAGGGTCTTAACGAAGATCTGCAT 9215817 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| || | ||||| ||| || | Sbjct 9215838 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 9215897 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| || | ||||||||| || || ||||| |||||||| | Sbjct 9215898 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 9215957 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | ||| || | ||||||||||| ||| | || |||| Sbjct 9215958 TCTTGGCCTTCACGTTCTCAATGGTATCACTTGGCTCGACCTCGAGGGTGATGGTCTTGC 9216017 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || || || || ||||| ||||||||| Sbjct 9216018 CAGTGAGGGTCTTGACAAAGATCTGCATG 9216046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830267817300