Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq20 235 4e-57 >seq20 Length=28185029 Score = 235 bits (260), Expect = 4e-57 Identities = 599/898 (67%), Gaps = 24/898 (3%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| || || |||||||||||||| |||||| ||||||||||| Sbjct 11633313 CCTCTCAGTAAAGAAGAGAAGGATTTTCCCATTGCCTACTCCATGGTGATCCATGAGAAG 11633254 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | ||||| || || |||||||| | || | ||||||||||| |||||||| Sbjct 11633253 ATTGAGATGTTTGAGCGACTTCTGCGAGCTATTTACACTCCTCAGAACATCTACTGTGTG 11633194 Query 107808 CACGTGGATGTGAAGTCCCCA-GAGACTTTCAAAGA-GGCGGTCAAGGCCATTATTTCCT 107865 || ||||| ||| ||| || ||| ||| |||| ||| || |||| || |||||| Sbjct 11633193 CATGTGGACAAGAAATCCTCACAAGAATTT--AAGATGGCTGTGGAGGCAATGGTTTCCT 11633136 Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCA 107925 |||| || || || || | |||| || || | ||| | |||||||| |||||| Sbjct 11633135 GCTTGCCTAACGTGTTTGTAGCCACTAGATTAGAAAGAGTGATATATGCCTCATGGTCCC 11633076 Query 107926 GAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-GTGCCA--TGGA 107982 | ||||| || || ||||||| ||| ||| |||| ||||||| || || |||| Sbjct 11633075 GGGTGCAGGCAGATTTGAACTGCATGAGAGATCTGCT---GAGCTCACATGTCAAGTGGA 11633019 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 ||| | || || || |||||||| ||||||||||| || ||||||| ||||| | Sbjct 11633018 GATACATGCTTAACACCTGCGGGACGGACTTCCCCATCAAAACCAATGGTGAGATAATTA 11632959 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTC--TGAGTC 108100 || || ||| | || || | ||| || |||||||||||| ||| | ||| | Sbjct 11632958 AGGTACTGAAGGCCCTCAATGGGAGGAATAGCATGGAGTCTGAG--ACCACCAATGACTA 11632901 Query 108101 CaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAA 108160 |||||| || ||| | || | || | || || |||| | | || | Sbjct 11632900 CAAAAAGGCCCGTTGGCAGTATCATTACAATGTCACTGACAGCGTCATCAGGACGAATGT 11632841 Query 108161 GATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGC 108220 || ||| || || || ||| |||||||| |||| ||||| || ||||||| Sbjct 11632840 GAGGAAAAGTCCCCCGCCCATTAACAGCCCCATGTTTTCAGGAAATGCTTACTTTGTGGT 11632781 Query 108221 CTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATG 108280 | | |||| ||||| ||||||| | || ||| | || | ||| | || || Sbjct 11632780 CACCAGAGCTTTTGTGAAACATGTGATGGAGAACAGAGAGGTTCAGAAACTTTTGGAGTG 11632721 Query 108281 GGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTG--CTC 108336 || || ||||| || ||||| || || ||| | |||||||| || | || || ||| Sbjct 11632720 GGAGAAGGACACATACAGCCCTGATGAGCACTTGTGGGCCACGCTAATGAGGATGCCCTC 11632661 Query 108337 CGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCA 108396 || | || || || | ||| || |||||| | | ||||||||| ||| Sbjct 11632660 CG----TTCCCGGATCACTGCCTGCTAACATCAAGTACGATACGTCAGACATGCAGGCCT 11632605 Query 108397 TCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATG 108456 |||| | | || |||||| ||| | | |||||| | || ||||| || || Sbjct 11632604 TCGCTCGTGTGGTGAAGTGGAGCTACGAAGCAGGAGATATGAGACACGGGGCCCCGTACT 11632545 Query 108457 CACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACT 108516 || ||| |||| | | || || | || | ||||| ||||| ||||| | Sbjct 11632544 ATCCTTGCACTGGTTCTTACAGAAGAGCAGTTTGTGTGTACGGAGCCGGTGACCTCAGTT 11632485 Query 108517 GGATTCTCCAGA-ACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATA 108573 || | || ||| | | || |||| ||||| |||||||| || | | ||||||| Sbjct 11632484 GGCTCCT-GAGACAAAAACATGTCTTTGCAAATAAGTTTGATCCTGAGATTGATGATA 11632428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348268693886850