Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq10 123 2e-23 seq5 98.7 8e-16 >seq10 Length=23202889 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||| | | |||| ||| || ||| ||||||||| |||||||||||| Sbjct 4415852 CCTCCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 4415793 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || |||||||| |||| ||||| ||||| || || Sbjct 4415792 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 4415733 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || || || | | | |||| | ||||||| Sbjct 4415732 ATGCCCTCCTTGTCCTGGATCTTAGCTTTGACATTTTCAATGGTGTCGCTGGGCTCCACC 4415673 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||| ||| || ||||| || ||||| |||||||||||||| ||||| ||| Sbjct 4415672 TCCAAGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATCTTG 4415622 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||| ||||| | | || |||| ||| || ||| ||||||||| |||||||||||| Sbjct 4416081 GCCTCCTCTGAGACGCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 4416022 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || |||||||| |||| ||||| ||||| || || Sbjct 4416021 GAGAGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 4415962 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||| ||| || || ||| || | | | | |||| | |||||| Sbjct 4415961 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCAC 4415902 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||| || ||||| || || || || || || ||||| ||||| Sbjct 4415901 CTCCAGGGTGATGGTCTTACCAGTGAGGGTTTTGACGAAGATCTGCAT 4415854 >seq5 Length=28395245 Score = 98.7 bits (108), Expect = 8e-16 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| ||||||||||| || ||| | || |||| Sbjct 9215382 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 9215441 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| || || || || | || ||||||||| | Sbjct 9215442 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 9215501 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||| ||||||| ||| || ||||||| Sbjct 9215502 TCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGC 9215561 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | ||||| ||||| |||||||| |||||| Sbjct 9215562 CAGTCAGGGTCTTGACAAAGATCTGCATG 9215590 Score = 98.7 bits (108), Expect = 8e-16 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| ||||||||||| || ||| | || |||| Sbjct 9219842 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 9219901 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| || || || || | || ||||||||| | Sbjct 9219902 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 9219961 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||| ||||||| ||| || ||||||| Sbjct 9219962 TCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAAGGTGATGGTCTTGC 9220021 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | ||||| ||||| |||||||| |||||| Sbjct 9220022 CAGTCAGGGTCTTGACAAAGATCTGCATG 9220050 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| ||||||||||| || ||| | || |||| Sbjct 9215838 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 9215897 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| || || || || | || ||||||||| | Sbjct 9215898 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 9215957 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | | || | ||| ||||| | ||| || ||||||| Sbjct 9215958 TCTTGGCCTTCACGTTCTCAATGGTATCACTTGGCTCGACCTCGAGGGTGATGGTCTTGC 9216017 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | || || ||||| |||||||| |||||||| Sbjct 9216018 CAGTGAGGGTCTTGACAAAGATCTGCATGTT 9216048 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/211 (69%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| |||||| || ||||||||||| || ||| | || |||| Sbjct 9220526 CAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 9220585 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| || || || || | || ||||||||| | Sbjct 9220586 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 9220645 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | | || | ||| ||||| | ||| || ||||||| Sbjct 9220646 TCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCGACCTCGAGGGTGATGGTCTTGC 9220705 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | || || ||||| |||||||| |||||||| Sbjct 9220706 CAGTGAGGGTCTTGACAAAGATCTGCATGTT 9220736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075079625525