Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 495 3e-135 seq5 116 3e-21 seq10 105 6e-18 >seq4 Length=27622843 Score = 495 bits (548), Expect = 3e-135 Identities = 1046/1551 (67%), Gaps = 33/1551 (2%) Strand=Plus/Minus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 ||| |||||| || | | |||| ||||||| ||| ||| | ||||| | |||||| Sbjct 17920072 TCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTCACGATCTGAAAC 17920013 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || || || | || | ||| ||| |||||| ||| | | ||||| || || ||| Sbjct 17920012 TCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTG 17919953 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || ||||| ||||| ||||| || || || |||||||| |||| ||| || ||| ||| Sbjct 17919952 TTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTC 17919893 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | ||||||||| | || || ||| || | | ||||||| ||| |||| |||||| Sbjct 17919892 ACGCCGTGCTTGGCGATCTTCTCCTTCAGGACCTTCCAGTCCAGCAGGTCGGTGGGCGTC 17919833 Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTT 22708 || |||||||| ||||| || | | ||| || ||||| |||||||||||| Sbjct 17919832 ---TTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGGGAGCCTTCGTACGTC 17919776 Query 22709 TCGTACGGACCATATATC-GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATAT 22767 ||||| || || | || || || || |||||||||||||||| ||| |||| || || Sbjct 17919775 TCGTAGGGGCCG-AGCTCAGCAGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGAT 17919717 Query 22768 AGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGAC-----GCTTTCGTACGGCATA 22822 ||||| ||||||| |||||| || || | | | ||||||| |||| Sbjct 17919716 GGTCTCAAAGATTTGAATGTTCA-----GCAGCTGAGCCTCAGGGCTTTCGAACGGGTAG 17919662 Query 22823 CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTC 22882 ||||| | | ||| ||||| |||| |||||| ||||| || |||||||| | || | Sbjct 17919661 CGCATGAGGATGAAGGCGTCTGCCAAACCCTGGACGCCGATTCCGATCGGCCTGTGGCGC 17919602 Query 22883 AGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAG 22942 || ||| | || || |||| || || | || ||||| | |||||||| Sbjct 17919601 TTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTAATTTCGATAATCTTGTTCAAG 17919542 Query 22943 TTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT-- 23000 ||| || | | ||| || | | |||||| ||| | ||| | Sbjct 17919541 TTTTTGACGATTACTTTGGTCACAAATGCTAGTTTTTTAAAGTC--AAAAGTCCGCTCAG 17919484 Query 23001 GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGG 23060 | || || |||||| ||||| ||||| ||||| || || || ||||| || | | Sbjct 17919483 GGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCGTCGC 17919424 Query 23061 ACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCT 23120 |||||||| || ||||| || || || ||||| | || || ||||||| ||| || Sbjct 17919423 TGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCT 17919364 Query 23121 GGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCT 23180 ||||||| || | ||||| | || ||||| |||||||||||||| || || || || Sbjct 17919363 GGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCTGTCT 17919304 Query 23181 GCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAAC-ACGTCGCACGTACCTGCCT 23239 | |||||||| || || |||||| |||||| | || ||| ||| | ||| ||| Sbjct 17919303 GGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACG-CGCTTGACCCTCCCT 17919245 Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCA--AATTCGGCACCGTAACAGTCGGCCAGGC 23297 || | ||| || | |||| || || || || || | || | || ||| |||| | Sbjct 17919244 TCCTTCTCATA--TGTGGTGTAAAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCC 17919187 Query 23298 CGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAA 23357 | || | | |||||||||| ||| ||| || || | || || | |||| | Sbjct 17919186 CAGGGCACTCGTTCGGACACATCAGAGACCAGTCTGTGTTGCTCTCCACTCTCTTCATGA 17919127 Query 23358 AAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGG 23417 | || || || ||||| | |||||||| || || | ||| | | |||||| || |||| Sbjct 17919126 ACAGGTCTGGGATCCACATGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGG 17919067 Query 23418 TGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGG 23477 ||||||| |||| ||||| ||||| ||||| || ||||| ||||| ||||| | || Sbjct 17919066 TGTTCTTCTTCAGCTCCAAGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGG 17919007 Query 23478 CAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACA 23537 ||||||| || || ||||| ||||| ||||| |||||||| || || ||||||||||| | Sbjct 17919006 CAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAGCGCGCAGTGTTGTTGTAGA 17918947 Query 23538 CTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACA---CTCGAAC 23594 |||| ||||| || ||||| |||||||| |||| ||| || | | ||| | Sbjct 17918946 CTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATATAGCTC---C 17918890 Query 23595 CTTTTGCTCGAACGTTG-TGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATC 23653 | | | || | | | ||| || | || || || ||| |||| || || || | Sbjct 17918889 CCGTCGATCTGATGCAGCTGACCG-CCACGCCAATTCCCCCGGCCGACTTGGAGATGAGG 17918831 Query 23654 GCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAG 23713 || || || ||||| |||||||| ||||| ||||||||||| ||||| | |||| || | Sbjct 17918830 GCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGG 17918771 Query 23714 AAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGC 23773 || || |||| || | || || | || ||| || || ||| ||||| Sbjct 17918770 AAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTAGGGGAAGCGTGG 17918711 Query 23774 GTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCG 23833 || || | | ||||| || |||||||| || ||||| || | |||||| | | Sbjct 17918710 GTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTGCGTTGATGTCCGTTTTG 17918651 Query 23834 TGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTA 23893 || || || | | || | ||| | ||||| || || | |||| || |||||| Sbjct 17918650 TGGATCCCAACAGATACTCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTGCCGTTG 17918591 Query 23894 ATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAG 23944 || || ||||| || || || | || || || || || || ||| |||| Sbjct 17918590 ATCTTCAACAGGTAGGACCGCTCCAGGGTCTTGAACCCGAAGAAGTTATAG 17918540 >seq5 Length=28395245 Score = 116 bits (128), Expect = 3e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 ||| || |||||| |||||||||||||| || || || |||||||| | || || || Sbjct 12623607 CACTTCATCTTTGCTTGTGTACTCTACAATCTCCGTGCACAGATTGCTGGATTTGATGGT 12623666 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||||| || | ||||| | ||||||||||||||||| ||||| Sbjct 12623667 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGT 12623726 Query 23167 GCCCGTCTCGACCTGCGACTCGATGAT 23193 || ||||| ||| ||||| ||||| Sbjct 12623727 ACCGGTCTCTGTCTGAGACTCAATGAT 12623753 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || ||| |||| || || || || ||||| | ||| ||||||| || | ||| | Sbjct 12624135 TTTCCACTCGTTTCATGAAGAGGTCTGGGATCCACATGGCGAAGAACAGGTCTCTGGCCC 12624194 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||||||||| || |||||||| ||||| || | ||||| ||||| || ||||| Sbjct 12624195 TCTGCTCCTCTTTACCTGTGTTCTTCTTCAACTCTAGGAAGTCAAACACATCGAAATGCC 12624254 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| || || || || || ||||||| Sbjct 12624255 ACGGCTCCAGGTACACAGCGAAGGCCCCGGGTCTCT 12624290 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 9215590 CATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAG 9215531 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || || | || ||||||||||||| | || || || || Sbjct 9215530 CGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 9215471 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| ||||||| || | || || || Sbjct 9215470 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 9215411 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || || || || || || ||||| || || | |||||||| ||| Sbjct 9215410 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGT 9215362 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || || |||||| |||| || || || | Sbjct 9220505 ATGCAGATCTTCGTTAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAGC 9220446 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || || ||| Sbjct 9220445 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 9220386 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||| ||| ||||||| || | || || ||| Sbjct 9220385 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 9220326 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || || || ||||| || || | || ||||| |||| Sbjct 9220325 ATCCAAAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGGTA 9220277 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| || || ||||| || |||||| |||| || || | Sbjct 9220738 CAAACATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGC 9220679 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||| | | || | || || | || ||||||||||||| | || || | Sbjct 9220678 CCAGCGATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTG 9220619 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 | |||||| | || || || |||||||| ||| ||||||| || | || | Sbjct 9220618 ATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACT 9220559 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| ||||| || || || || ||||| || || | || ||||| |||| Sbjct 9220558 ACAACATCCAAAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGGTA 9220505 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || || |||||| |||| || || || | Sbjct 9220277 ATGCAGATCTTCGTTAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAGC 9220218 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || || ||| Sbjct 9220217 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 9220158 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||| ||| ||||||| || | || || ||| Sbjct 9220157 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 9220098 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || || || ||||| || || | || ||||| || Sbjct 9220097 ATCCAAAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGG 9220051 >seq10 Length=23202889 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| || || || || || || || |||||| | || || || || Sbjct 4416081 CATGCAGATCTTCGTCAAAACCCTCACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 4416140 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| |||||| | || ||| ||||| ||| | || || ||||| Sbjct 4416141 CGACACCATTGAAAATGTCAAAGCTAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCA 4416200 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| ||| ||||||| ||| | ||| || || Sbjct 4416201 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCCGACTACAA 4416260 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || || ||||| || | |||||||| || Sbjct 4416261 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGTCTGAGGGGAGG 4416308 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| ||||| || || || |||||| | || || || || Sbjct 4415623 AAGATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCTTGGAGGTGGAGCCC 4415682 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | |||| |||||| | || ||||||||| ||| | || || ||| Sbjct 4415683 AGCGACACCATTGAAAATGTCAAAGCTAAGATCCAGGACAAGGAGGGCATCCCCCCAGAC 4415742 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| ||||||| || | ||| || Sbjct 4415743 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTAC 4415802 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || || || || ||||| || | ||||| || |||| Sbjct 4415803 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGTCTGAGAGGAGGTA 4415854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766260698000