Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4 499 4e-136 seq23 102 1e-16 seq8 102 1e-16 >seq4 Length=27622843 Score = 499 bits (552), Expect = 4e-136 Identities = 1286/1948 (66%), Gaps = 31/1948 (2%) Strand=Plus/Minus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| ||||| || |||| | | |||||| || | || | || || || || || Sbjct 17920084 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTC 17920025 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | || || |||||||| | || || || ||||| || || ||||| || | ||| Sbjct 17920024 ACGATCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 17919965 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 17919964 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 17919905 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-ATGTTCCCAATTCCAA-A 62562 | || || || | |||| | ||| || || || || | |||| | |||| | Sbjct 17919904 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGACCTTCC--AGTCCAGCA 17919847 Query 62563 GATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCG 62615 | || | || | | ||| || || || || || || ||| | Sbjct 17919846 GGTCGGTGGGCGTCTTCTCCCACATGTCG-------TACTGGAGGATGCCCTTGCTGACC 17919794 Query 62616 TACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCT 62675 || ||| | || || || || || || || |||| || | || |||||||| Sbjct 17919793 GGGGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCAGCCAGCTCGCAGCTCGCCTCC 17919734 Query 62676 AATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTA 62735 | || |||| || ||||| |||||||| | | || || || || || ||||| Sbjct 17919733 AGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCAGGGCTT 17919674 Query 62736 TCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATA 62795 || || || || | ||| || || ||||| || || || || || || || ||||| Sbjct 17919673 TCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGGACGCCGATTCCGATC 17919614 Query 62796 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 62855 || || || | ||| || || | || ||||| || | || || || ||||| || ||| Sbjct 17919613 GGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTAATTTCGATA 17919554 Query 62856 ATTTTATTGAGATTTCTGACAATTACTTTGACCACA--TCCTTCAGTTTGAGAAAATCAA 62913 || || || | ||| |||| ||||||||| |||| | || ||||| ||| |||| Sbjct 17919553 ATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACAAATGCT--AGTTTTTTAAAGTCAA 17919496 Query 62914 AT---CGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTA 62970 | ||| || | || ||||||| | || | || |||||||||||||| |||| Sbjct 17919495 AAGTCCGCTCAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTA 17919436 Query 62971 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTC 63030 |||||| | | || | | ||| || ||||| || || || | ||||| || | Sbjct 17919435 CCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGC 17919376 Query 63031 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 63090 | | ||| || || || ||||| |||| || || || || || || ||| | || |||| Sbjct 17919375 CCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTAC 17919316 Query 63091 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT 63150 | ||||| |||| || || ||||| || | ||| || ||||||| | | | Sbjct 17919315 CGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGCT 17919256 Query 63151 TGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGT-TCGAACTCGTCTCCCCAAACA 63209 || |||| ||| | || ||| || || || | | |||||||| || ||||| Sbjct 17919255 TGACCCTCCCTTCCTTCTCATATGTGGTGTA-AAGCTTCTCGAACTCCTCCCCCCAGCAC 17919197 Query 63210 TTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT 63269 | ||||| | ||| || || | ||||||||||| ||||| ||| || || |||| Sbjct 17919196 TCGTCCAGCCCAGGGCACTCGTTCGGACACATCAGAGACCAGTCTGTGTTGCTCTCCACT 17919137 Query 63270 CGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTC 63328 | ||||| || || || || ||||| | || || ||| || ||||| | || || || Sbjct 17919136 CTCTTCATGAACAGGTCTGGGATCCACATGGCGTAGAAA-AGGTCTCTGGCCCTCTGCTC 17919078 Query 63329 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63388 ||| ||||| || ||||| || || || | ||| | | | ||| | ||||| || || Sbjct 17919077 CTCCTTTCCGGTGTTCTTCTTCAGCTCCAAGAAGTCAAACACATCGAAGTGCCAGGGCTC 17919018 Query 63389 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 63448 || ||| ||||| | |||| |||| ||||| |||||||| || | ||| | || || Sbjct 17919017 CAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAGCGCGCAGT 17918958 Query 63449 GTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGAT 63508 ||| || || ||||||| ||| || | | ||||| || | || ||||| |||| ||| Sbjct 17918957 GTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGAT 17918898 Query 63509 ATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 63568 ||||| || | | | || || | | | || |||||||| ||| || || Sbjct 17918897 ATAGCTCCCCGTCGATCTGATGCAGCTGACCGCCACGCCAATTCCCCCGGCCGACTTGGA 17918838 Query 63569 GATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTT 63628 ||| | || || | || | |||||| || |||||||| ||||| || || ||||| Sbjct 17918837 GATGAGGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGC 17918778 Query 63629 AAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGA 63688 || || || ||||| |||| || | | | |||||||| || || | ||||| || Sbjct 17918777 GAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTAGGGGA 17918718 Query 63689 AGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63748 |||||| || ||||| || || || || || |||||||||||||| |||| || || || Sbjct 17918717 AGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTGCGTTGATGTC 17918658 Query 63749 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808 | || || || || || | || | ||| | ||||||||| || | || | | ||| Sbjct 17918657 CGTTTTGTGGATCCCAACAGATACTCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTT 17918598 Query 63809 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63868 | ||| || ||||||| |||||| |||| || || || || || |||| || || Sbjct 17918597 GCCGTTGATCTTCAACAGGTAGGACCGCTCCAGGGTCTTGAACCCGAAGAAGTTATAGGA 17918538 Query 63869 AAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATC 63928 || || || ||| | || || | || ||||| || || | | | ||| || || Sbjct 17918537 GAAATCGCGGTCGAAGATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTC 17918478 Query 63929 CATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGA 63987 | || | ||| || || || ||||| || | ||| || || || |||||| Sbjct 17918477 GAGCGT-CTCCTTGGAGATCATGGGAGAGTGGCGTCTATTCAAGGGGTTGACGTAGTTGT 17918419 Query 63988 ATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGG 64047 | | ||||||||||| ||||| || | || || || || ||||| || ||||| | || Sbjct 17918418 ACAGGTCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGG 17918359 Query 64048 CTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTT 64107 | || | || || || ||||| || || || || | || || ||||| || || | Sbjct 17918358 CGATCCGTGCAGCGAGGATGGCGTAGTCGGGGTGCTTGGTTGTGAGGGTGGCGGCGATCT 17918299 Query 64108 CGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCT 64167 | || ||||| ||||| | || || ||||| || || | || | || || || |||| Sbjct 17918298 CTGCGGCCAGCGTGTCGAGCTCCACGGTTGTGACGCCGCTGTACAAACCCTGGATCACCT 17918239 Query 64168 TCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAA 64227 |||| | || | | ||||| | | || | ||| | || ||||||| || | Sbjct 17918238 TCATCGTAATCTGGGTCGGATCCACAAAGTCAGAGTTCAGCCCGTAGCACAGCTTCTGGA 17918179 Query 64228 TACGAGACGTGATTTTATCAAACATGAC 64255 | ||||||||||||||||| |||||||| Sbjct 17918178 TGCGAGACGTGATTTTATCGAACATGAC 17918151 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||| || || |||||| || | || || || || ||||| | Sbjct 17920912 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCCGCGATGTGGATGT 17920853 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| || || || || ||||||||||| || | |||||||||||| || | | |||| Sbjct 17920852 TCAGGGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCTGCAGCCATCTTGAGTACGGTCT 17920793 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | |||||||| | |||| | ||| || |||| Sbjct 17920792 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCAGGAA 17920742 >seq23 Length=22362490 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || || ||||| | ||||| || | || || || |||||||| || | ||| | Sbjct 14674783 CCTCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCT 14674724 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||| | |||| ||||||||| ||||| ||||||||||| || ||||| ||||| | Sbjct 14674723 TGAGCCAATAAATGGCAGCGAATGAGCCGGAGAAGAAGATTCCCTCCACTGCTGCAAAAG 14674664 Query 33724 CAATAAGTCTCTCTCC 33739 | | || || ||| || Sbjct 14674663 CCACAATTCGCTCCCC 14674648 >seq8 Length=22893611 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || ||||||||||| ||||| | ||||| Sbjct 22892198 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTTT 22892139 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || | |||||| || || || ||||||||||| || || || || |||| Sbjct 22892138 TCAGCCAGAAGATCGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 22892079 Query 33724 C 33724 | Sbjct 22892078 C 22892078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817403182000