Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4 120 3e-22 seq8 95.1 1e-14 >seq4 Length=27622843 Score = 120 bits (132), Expect = 3e-22 Identities = 845/1350 (63%), Gaps = 13/1350 (1%) Strand=Plus/Minus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 ||||| ||||| || | |||||| |||||||| | || || | || || || ||||| Sbjct 17920036 AGGTGAGGATTCACGATCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTG 17919977 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || | ||| |||||||| || || | | || || | || || || || ||||| Sbjct 17919976 GTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATC 17919917 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | || ||||| || |||| || || | || ||| || || | ||| Sbjct 17919916 GGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGACCTTC 17919857 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 || ||| | || || || |||| |||||| || || || || || || || || Sbjct 17919856 CAGTCCAGCAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTG 17919797 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT 37422 | || || | | || ||||| || || ||| ||| || ||||| || | Sbjct 17919796 ACCGGGGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCAGCCAGCTCGCAGCTCGCC 17919737 Query 37423 TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCG 37482 || || ||||| || || || || || || ||||| || || | | | || || | Sbjct 17919736 TCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCAGGG 17919677 Query 37483 CTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCT 37542 || ||||| | |||| || | || || | || ||||||||||| || ||||| || Sbjct 17919676 CTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGGACGCCGATTCCG 17919617 Query 37543 ATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCT 37602 || || || || ||| || || | || ||| |||||| || || || || || Sbjct 17919616 ATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTAATTTCG 17919557 Query 37603 ATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CA 37660 || || || || | ||||| || | || ||| || | | | | || | || || Sbjct 17919556 ATAATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACAAATGCTAGTTTTTTAAAGTCA 17919497 Query 37661 TAAATACG-TTATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCA 37719 || | || | | | || | | | | || || || | |||||||| || || Sbjct 17919496 AAAGTCCGCTCAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCT 17919437 Query 37720 ACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTT 37779 || ||||| ||| | | | | | || ||||| ||||| || || | | || || Sbjct 17919436 ACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTG 17919377 Query 37780 CCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTT 37839 |||| ||| || ||| || | || || | ||||| || || || |||||||| Sbjct 17919376 CCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTA 17919317 Query 37840 CCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAACGA-TCG 37897 || |||| | || | ||||||||| | | ||| | || || || || || | || Sbjct 17919316 CCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCA-CACCTGCTGAGCCTTCACCACGCG 17919258 Query 37898 CTTTA-AtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCAT 37956 ||| | | ||| | | || ||| | || | || | || || | |||||| Sbjct 17919257 CTTGACCCTCCCTTCCT--TCTCATATGTGGTGTAAAGCTTCTCGAACTCCTCCCCCCAG 17919200 Query 37957 ACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCT 38016 ||| | || || || ||| |||||||| |||||||| ||| | | || Sbjct 17919199 CACTCGTCCAGCCCAGGGCACTCGTTCGGACACATCAGAGACCAGTCTGTGTTGCTCTCC 17919140 Query 38017 ACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATA 38075 || | | ||| || | || || | ||| ||| ||| || | ||| ||| || | Sbjct 17919139 ACTCTCTTCATGAACAGGTCTGGGATCCA-CATGGCGTAGAAAAGGTCTCTGGCCCTCTG 17919081 Query 38076 TTCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATG 38134 || || || || ||| ||||| |||| | || || || | ||| |||||| | Sbjct 17919080 CTCCTCCTTTCCGGTGTTC-TTCTTCAGCTCCAAGAAGTCAAACACATCGAAGTGCCAGG 17919022 Query 38135 GTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAA 38194 | || | || || | | ||||| || || || | |||||||| | | || | Sbjct 17919021 GCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAGCGCG 17918962 Query 38195 CTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGG 38254 | ||||| || || | ||| | ||| || || | || || || |||||||| | |||| Sbjct 17918961 CAGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGG 17918902 Query 38255 ATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTT 38314 ||||| | ||| | | || || || | || || || ||||| || || | Sbjct 17918901 CGATATAGCTCCCCGTCGATCTGATGCAGCTGACCGCCACGCCAATTCCCCCGGCCGACT 17918842 Query 38315 TTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTA 38374 | || || | || || || || | ||| || | || ||||| || ||||| || || | Sbjct 17918841 TGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCA 17918782 Query 38375 TTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAG 38434 | | || | || || || |||| || ||| ||||| ||||| || | |||| Sbjct 17918781 TGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTAG 17918722 Query 38435 GAGATGCATGTATGAACCATTTTTCCGACA 38464 | || || || ||||||| || ||||||| Sbjct 17918721 GGGAAGCGTGGGTGAACCACTTCTCCGACA 17918692 >seq8 Length=22893611 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || || | ||||||||||| |||| ||||| Sbjct 22892196 TCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTTTTC 22892137 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || ||||| || |||||||| ||||| ||||||||||| || || || || Sbjct 22892136 AGCCAGAAGATCGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGGCC 22892077 Query 11774 ACTAC 11778 || || Sbjct 22892076 ACCAC 22892072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524653586000