Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4 502 3e-137 seq8 96.9 5e-15 >seq4 Length=27622843 Score = 502 bits (556), Expect = 3e-137 Identities = 1284/1943 (66%), Gaps = 21/1943 (1%) Strand=Plus/Minus Query 65118 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 65177 ||||| ||||| || |||| | | |||||| || | || | || || || ||||| Sbjct 17920084 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTC 17920025 Query 65178 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 65237 || | ||||| |||||||| | || || || ||||| || || ||||| || | ||| Sbjct 17920024 ACGATCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 17919965 Query 65238 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 65297 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 17919964 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 17919905 Query 65298 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-AGGTTCCCAATTCCAA-A 65355 | || || || | |||| | ||| || || || || | |||| | |||| | Sbjct 17919904 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGACCTTCC--AGTCCAGCA 17919847 Query 65356 GATCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGA 65413 | || | || | | | || || || || || ||| | || Sbjct 17919846 GGTCGGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGGGA 17919789 Query 65414 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 65473 ||| | || || ||||| || || || |||| || || || |||||||| | || Sbjct 17919788 GCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCAGCCAGCTCGCAGCTCGCCTCCAGGGC 17919729 Query 65474 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAA 65533 |||| || ||||| || ||||| | | || || || || || |||| || || Sbjct 17919728 GGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCAGGGCTTTCGAA 17919669 Query 65534 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 65593 || || | ||| || || |||||||| || || || || || || ||||| || || Sbjct 17919668 CGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGGACGCCGATTCCGATCGGCCT 17919609 Query 65594 ATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 65653 || | ||| || || | || ||||| || | || || || ||||| || ||||| || Sbjct 17919608 GTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTAATTTCGATAATCTT 17919549 Query 65654 ATTGAGATTTCTGACAATTACTTTGACCACA--TCCTTCAGTTTGAGAAAATCAAAT--- 65708 || | ||| |||| ||||||||| |||| | || ||||| ||| ||||| Sbjct 17919548 GTTCAAGTTTTTGACGATTACTTTGGTCACAAATGCT--AGTTTTTTAAAGTCAAAAGTC 17919491 Query 65709 CGCTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCA 65768 |||||| | || ||||||| | || | || ||||||||||| || ||||||||| Sbjct 17919490 CGCTCAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCA 17919431 Query 65769 TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 65828 | | | || | | ||| || ||||| || || || | |||||||| || | | Sbjct 17919430 TCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGA 17919371 Query 65829 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 65888 || || || || ||||| |||| || || || || || || ||| | || ||||| ||| Sbjct 17919370 TTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTT 17919311 Query 65889 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTAT 65948 || |||| || || ||||| || | ||| || ||||||| | | ||| Sbjct 17919310 TCTGTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGCTTGACC 17919251 Query 65949 CTCTTTTCTCTTTCGTATAGTGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTC 66007 ||| ||| | || ||| || || || | | |||||||| || ||||| | ||| Sbjct 17919250 CTCCCTTCCTTCTCATATGTGGTGTA-AAGCTTCTCGAACTCCTCCCCCCAGCACTCGTC 17919192 Query 66008 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 66067 || ||||| || || | ||||||||||| ||||| ||| || || ||||| || Sbjct 17919191 CAGCCCAGGGCACTCGTTCGGACACATCAGAGACCAGTCTGTGTTGCTCTCCACTCTCTT 17919132 Query 66068 CATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAAATCTCTGGTTCTATGTTCCTCGT 66126 ||| || || || || ||||| | || || ||| | ||||||| || || ||||| | Sbjct 17919131 CATGAACAGGTCTGGGATCCACATGGCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCT 17919073 Query 66127 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGT 66186 |||| || ||||| || || || | ||| | | | ||| | ||||| || |||| || Sbjct 17919072 TTCCGGTGTTCTTCTTCAGCTCCAAGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGT 17919013 Query 66187 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 66246 | ||||| | |||| |||| ||||| |||||||| || | ||| | || ||||| | Sbjct 17919012 ACATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAGCGCGCAGTGTTGT 17918953 Query 66247 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGC 66306 | || ||||||| ||| || | | || ||||| | || ||||| |||| |||||||| Sbjct 17918952 TGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATATAGC 17918893 Query 66307 TTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 66366 | || | | | || || | | | || |||||||| ||| || ||||| | Sbjct 17918892 TCCCCGTCGATCTGATGCAGCTGACCGCCACGCCAATTCCCCCGGCCGACTTGGAGATGA 17918833 Query 66367 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 66426 || || | || | ||| || || ||||| || || || || || ||||| || | Sbjct 17918832 GGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCA 17918773 Query 66427 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486 | || ||||| |||| || | | | |||||||| || || | ||||| ||||||| Sbjct 17918772 GGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTAGGGGAAGCGT 17918713 Query 66487 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 66546 | || ||||| || || || || || |||||||||||||| |||| || || ||| || Sbjct 17918712 GGGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTGCGTTGATGTCCGTTT 17918653 Query 66547 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 66606 || || || || | || | ||| | ||||||||| || | || | | ||| || Sbjct 17918652 TGTGGATCCCAACAGATACTCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTGCCGT 17918593 Query 66607 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 66666 | || ||||||| |||||| |||| || || || || || |||| || || || | Sbjct 17918592 TGATCTTCAACAGGTAGGACCGCTCCAGGGTCTTGAACCCGAAGAAGTTATAGGAGAAAT 17918533 Query 66667 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGG 66726 | || ||| | || || | |||||||| || || | | | ||| | || | | Sbjct 17918532 CGCGGTCGAAGATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGCG 17918473 Query 66727 TAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAA 66785 | | ||| || || || ||||| || | ||| || ||||| |||||| | | Sbjct 17918472 T-CTCCTTGGAGATCATGGGAGAGTGGCGTCTATTCAAGGGGTTGACGTAGTTGTACAGG 17918414 Query 66786 TCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATT 66845 ||||||||||| ||||| || | || || || |||||||| || ||||| ||||| || Sbjct 17918413 TCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATC 17918354 Query 66846 CTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCT 66905 | || || | ||||| || || || || | || || ||||| || || || || Sbjct 17918353 CGTGCAGCGAGGATGGCGTAGTCGGGGTGCTTGGTTGTGAGGGTGGCGGCGATCTCTGCG 17918294 Query 66906 GCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATA 66965 ||||| ||||| | || || ||||| || || | || | || ||||| |||||||| Sbjct 17918293 GCCAGCGTGTCGAGCTCCACGGTTGTGACGCCGCTGTACAAACCCTGGATCACCTTCATC 17918234 Query 66966 GCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGA 67025 | || | | ||||| | | |||| ||| | || || || | || || ||| Sbjct 17918233 GTAATCTGGGTCGGATCCACAAAGTCAGAGTTCAGCCCGTAGCACAGCTTCTGGATGCGA 17918174 Query 67026 GATGTGATTTTATCAAACATGAC 67048 || ||||||||||| |||||||| Sbjct 17918173 GACGTGATTTTATCGAACATGAC 17918151 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || ||||| || || |||||| || | || || || || ||||| | Sbjct 17920912 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCCGCGATGTGGATGT 17920853 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| || || || || ||||||||||| || | |||||||||||| || | | |||| Sbjct 17920852 TCAGGGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCTGCAGCCATCTTGAGTACGGTCT 17920793 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | |||||||| | |||| | ||| || |||| Sbjct 17920792 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCAGGAA 17920742 >seq8 Length=22893611 Score = 96.9 bits (106), Expect = 5e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| || || | |||||||| || || ||||||||||| ||||| | ||||| Sbjct 22892198 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTTT 22892139 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || || | || || || ||||| ||||| ||||| || || || || |||| Sbjct 22892138 TCAGCCAGAAGATCGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 22892079 Query 36300 C 36300 | Sbjct 22892078 C 22892078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172594321000