Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 508 8e-139 seq8 111 2e-19 seq23 102 1e-16 >seq4 Length=27622843 Score = 508 bits (562), Expect = 8e-139 Identities = 1282/1938 (66%), Gaps = 11/1938 (1%) Strand=Plus/Minus Query 78997 TTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 79056 ||||| ||||| || |||| | | |||||| || | || | || || || ||||| Sbjct 17920084 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTC 17920025 Query 79057 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCC 79116 || | ||||| |||||||| | || || || ||||| || || ||||| || | ||| Sbjct 17920024 ACGATCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 17919965 Query 79117 ACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAAT 79176 | || || || || |||| || || || || || ||||| ||||| || |||| || Sbjct 17919964 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 17919905 Query 79177 AAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGA 79236 | || || || | |||| ||| || || || || | ||| ||| || Sbjct 17919904 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGACCTTCCAGTCCAGCAGG 17919845 Query 79237 TCAGACGG-GACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCC 79295 || | || | | | | ||| | || || || || || || || || | || || Sbjct 17919844 TCGGTGGGCGTCTTC-TCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGGGAGCC 17919786 Query 79296 TGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCC 79355 | ||| || || || || || || | || | || || |||||||| | || | Sbjct 17919785 TTCGTACGTCTCGTAGGGGCCGAGCTCAGCAGCCAGCTCGCAGCTCGCCTCCAGGGCGGC 17919726 Query 79356 GTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGG 79415 ||| || ||||| || || || | | || || || || || |||| || || || Sbjct 17919725 GTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCAGGGCTTTCGAACGG 17919666 Query 79416 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475 || | ||| || || |||||||| || || || || || || ||||| || || || Sbjct 17919665 GTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGGACGCCGATTCCGATCGGCCTGTG 17919606 Query 79476 TCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 79535 | ||| || || | || ||||| || | || || || ||||| || ||||| || || Sbjct 17919605 GCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTAATTTCGATAATCTTGTT 17919546 Query 79536 GAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAAT---CGTCC 79592 | || |||| ||||||||| |||| |||||| ||| ||||| || | Sbjct 17919545 CAAGTTTTTGACGATTACTTTGGTCACAAATGCTAGTTTTTTAAAGTCAAAAGTCCGCTC 17919486 Query 79593 ATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGC 79652 | | || ||||||| | ||||| || ||||||||||| || |||||||||| | Sbjct 17919485 AGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCGTC 17919426 Query 79653 ATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTG 79712 | || | | |||||| ||||||||||| || | || ||||| || | ||| || Sbjct 17919425 GCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTG 17919366 Query 79713 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAAT 79772 || || ||||| |||| || || || || || || ||| |||| ||||| ||||| | Sbjct 17919365 CTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCTGT 17919306 Query 79773 CTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTT 79832 ||| || || ||||| || | ||| || ||||||| | | |||| ||| Sbjct 17919305 CTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGCTTGACCCTCCC 17919246 Query 79833 TTCTCTTTCGTATTGTGTATATAATCGT-TCGAACTCGTCTCCCCAAACATCGTCTAATC 79891 ||| | || ||| || || || | | |||||||| || ||||| ||||| | | Sbjct 17919245 TTCCTTCTCATATGTGGTGTA-AAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCC 17919187 Query 79892 CAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAA 79951 |||| || |||| |||||||||| ||||| ||| | || |||| ||||| | Sbjct 17919186 CAGGGCACTCGTTCGGACACATCAGAGACCAGTCTGTGTTGCTCTCCACTCTCTTCATGA 17919127 Query 79952 AGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 | || || || ||||| | || || ||| || ||||||| || |||||||| ||||| Sbjct 17919126 ACAGGTCTGGGATCCACATGGCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTTTCCG 17919068 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 || ||||| || || || | ||| | | | ||| | ||||| || |||| ||| ||| Sbjct 17919067 GTGTTCTTCTTCAGCTCCAAGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATG 17919008 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | |||| || | ||||| |||||||| || | ||| | || ||||| || || Sbjct 17919007 GCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAGCGCGCAGTGTTGTTGTAG 17918948 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 ||||||| ||| || | | || ||||| | || ||||| |||| ||||||||| || Sbjct 17918947 ACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATATAGCTCCCC 17918888 Query 80191 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 80250 | | | || || | | | || |||||||| ||| || ||||| | || Sbjct 17918887 GTCGATCTGATGCAGCTGACCGCCACGCCAATTCCCCCGGCCGACTTGGAGATGAGGGCA 17918828 Query 80251 CATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAA 80310 || | || | ||| || || ||||| || ||||| || || ||||| || || || Sbjct 17918827 CACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAG 17918768 Query 80311 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 80370 ||||| |||| || | | | |||||||| || || | ||||| |||||||| || Sbjct 17918767 CAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTAGGGGAAGCGTGGGTG 17918708 Query 80371 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGA 80430 ||||| || || ||||| || |||||||||||||| |||| | || ||| || || Sbjct 17918707 AACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTGCGTTGATGTCCGTTTTGTGG 17918648 Query 80431 ATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATT 80490 || || || | || | ||| | ||||||||| || | || | | ||| || || Sbjct 17918647 ATCCCAACAGATACTCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTGCCGTTGATC 17918588 Query 80491 TTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 80550 ||||||| ||| || |||| || || || || || |||| || || || || || Sbjct 17918587 TTCAACAGGTAGGACCGCTCCAGGGTCTTGAACCCGAAGAAGTTATAGGAGAAATCGCGG 17918528 Query 80551 TCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATA 80610 ||| | || || | |||||||| || || | | | ||| | || | || | Sbjct 17918527 TCGAAGATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGCGT-CTC 17918469 Query 80611 CTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTC 80669 ||| || || || ||||| || | ||| || || || |||||| | | ||||| Sbjct 17918468 CTTGGAGATCATGGGAGAGTGGCGTCTATTCAAGGGGTTGACGTAGTTGTACAGGTCCTC 17918409 Query 80670 CATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGC 80729 |||||| ||||| || | || || || || ||||| || ||||| ||||| || | || Sbjct 17918408 CATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATCCGTGC 17918349 Query 80730 GGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAG 80789 || | ||||| || || || || | || || ||||| || || || || ||||| Sbjct 17918348 AGCGAGGATGGCGTAGTCGGGGTGCTTGGTTGTGAGGGTGGCGGCGATCTCTGCGGCCAG 17918289 Query 80790 AGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTAT 80849 ||||| | || || ||||| || || | || | || ||||| |||||||| | || Sbjct 17918288 CGTGTCGAGCTCCACGGTTGTGACGCCGCTGTACAAACCCTGGATCACCTTCATCGTAAT 17918229 Query 80850 TTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGT 80909 | | ||||| | | |||| ||| | || || || | || || |||||||| Sbjct 17918228 CTGGGTCGGATCCACAAAGTCAGAGTTCAGCCCGTAGCACAGCTTCTGGATGCGAGACGT 17918169 Query 80910 GATTTTATCAAACATGAC 80927 ||||||||| |||||||| Sbjct 17918168 GATTTTATCGAACATGAC 17918151 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| ||||| || || |||||| || | || || || || ||||| | Sbjct 17920912 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCCGCGATGTGGATGT 17920853 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| || || || || ||||||||||| || | |||||||||||| || | | |||| Sbjct 17920852 TCAGGGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCTGCAGCCATCTTGAGTACGGTCT 17920793 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | |||||||| | |||| | ||| || |||| Sbjct 17920792 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCAGGAA 17920742 >seq8 Length=22893611 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || ||||||||||| ||||| | ||||| Sbjct 22892198 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTTT 22892139 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || | || || || ||||| ||||||||||| || || ||||| |||| Sbjct 22892138 TCAGCCAGAAGATCGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 22892079 Query 50102 CAAC 50105 | || Sbjct 22892078 CCAC 22892075 >seq23 Length=22362490 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || ||||| || |||||||| | || || || |||||||| || | ||| | Sbjct 14674783 CCTCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCT 14674724 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||| | |||| || ||||| || || ||||||||||| || ||||| ||||| | Sbjct 14674723 TGAGCCAATAAATGGCAGCGAATGAGCCGGAGAAGAAGATTCCCTCCACTGCTGCAAAAG 14674664 Query 50102 CAACAAGTCTCTCTCC 50117 | |||| || ||| || Sbjct 14674663 CCACAATTCGCTCCCC 14674648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268575541000