Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 479 4e-130 seq8 96.9 5e-15 seq5 95.1 2e-14 seq23 93.3 6e-14 >seq4 Length=27622843 Score = 479 bits (530), Expect = 4e-130 Identities = 1307/1989 (66%), Gaps = 21/1989 (1%) Strand=Plus/Minus Query 71080 TTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 71139 || || ||||| || |||| | | |||||| || | || | || || |||||||| Sbjct 17920084 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTC 17920025 Query 71140 ACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCC 71199 || | ||||| |||||||| | || || || ||||| || || ||||| || | ||| Sbjct 17920024 ACGATCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 17919965 Query 71200 ACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 71259 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 17919964 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 17919905 Query 71260 AGACTATTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAG-AGATTCCCAATTCCAA 71316 || || || || | || ||| | || || || || || || | |||| | |||| Sbjct 17919904 AGGCTGTTCCTCACGCC--GTGCTTGGCGATCTTCTCCTTCAGGACCTTCC--AGTCCAG 17919849 Query 71317 -AGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGA 71375 || || | || ||||| || || | || Sbjct 17919848 CAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGGGA 17919789 Query 71376 TCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGC 71435 ||| | || || ||||| || || | | || || || || |||||||| | || Sbjct 17919788 GCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCAGCCAGCTCGCAGCTCGCCTCCAGGGC 17919729 Query 71436 TCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAA 71495 | || || ||||| || || || | | || || || || || ||||| || || Sbjct 17919728 GGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCAGGGCTTTCGAA 17919669 Query 71496 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCT 71555 || || | ||| || || |||||||| || || || ||||| || ||||| || || Sbjct 17919668 CGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGGACGCCGATTCCGATCGGCCT 17919609 Query 71556 GTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 71615 ||| | ||| || || | || ||||| || | || || || ||||| || ||||| || Sbjct 17919608 GTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTAATTTCGATAATCTT 17919549 Query 71616 ATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCC 71675 || | ||| |||| ||||||||| |||| |||||| ||| ||||| ||| Sbjct 17919548 GTTCAAGTTTTTGACGATTACTTTGGTCACAAATGCTAGTTTTTTAAAGTCAAAAGTCCG 17919489 Query 71676 ATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATT 71732 || | || ||| ||| | || | || ||||||||||| || |||||||||| Sbjct 17919488 CTCAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATC 17919429 Query 71733 AGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 71792 | || || | | ||||| ||||| || || || | |||||||| || | ||| Sbjct 17919428 GTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATT 17919369 Query 71793 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTC 71852 || || || ||||| |||| || || || || || || || |||| ||||| ||||| Sbjct 17919368 CTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTC 17919309 Query 71853 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCT 71912 |||| || || ||||| || | ||| || ||||||| | | |||| || Sbjct 17919308 TGTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGCTTGACCCT 17919249 Query 71913 CTTTTCTCTTTCGTATTGTGTATATAATCGT-TCGAACTCGTCTCCCCAAGCATT-GTCT 71970 | ||| | || ||| || || || | | |||||||| || ||||| ||| | ||| Sbjct 17919248 CCCTTCCTTCTCATATGTGGTGTA-AAGCTTCTCGAACTCCTCCCCCCA-GCACTCGTCC 17919191 Query 71971 AATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTC 72030 | ||||| || || ||||||||||||| ||||| ||| | | |||| ||| Sbjct 17919190 AGCCCAGGGCACTCGTTCGGACACATCAGAGACCAGTCTGTGTTGCTCTCCACTCTCTTC 17919131 Query 72031 ATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTT 72089 || || || || || ||||| | || || ||| || ||||||| || |||||||| || Sbjct 17919130 ATGAACAGGTCTGGGATCCACATGGCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTT 17919072 Query 72090 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149 ||| || ||||| || || || | ||| | | | ||| | ||||| || |||| ||| Sbjct 17919071 TCCGGTGTTCTTCTTCAGCTCCAAGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTA 17919012 Query 72150 TATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 72209 ||||| | |||| |||| ||||| |||||||| || | ||| | || ||||| || Sbjct 17919011 CATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAGCGCGCAGTGTTGTT 17918952 Query 72210 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 72269 || ||||||| ||| || | | || ||||| || ||||| |||| ||||||||| Sbjct 17918951 GTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATATAGCT 17918892 Query 72270 TCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 || | | | || ||| | | | || |||||||| ||| || ||||| | Sbjct 17918891 CCCCGTCGATCTGATGCAGCTGACCGCCACGCCAATTCCCCCGGCCGACTTGGAGATGAG 17918832 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 || || | || | ||| || || ||||| || || || || || ||||| || || Sbjct 17918831 GGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAG 17918772 Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 || ||||| |||| || | | | |||||||| || || | ||||| |||||||| Sbjct 17918771 GAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTAGGGGAAGCGTG 17918712 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG 72509 || ||||| || || ||||| || |||||||||||||| |||| | || ||| || Sbjct 17918711 GGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTGCGTTGATGTCCGTTTT 17918652 Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATT 72569 || || || || | || | ||| | ||| ||||| || | || | | ||| || Sbjct 17918651 GTGGATCCCAACAGATACTCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTGCCGTT 17918592 Query 72570 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 72629 || ||||||| |||||| |||| || || || || || |||| || || || || Sbjct 17918591 GATCTTCAACAGGTAGGACCGCTCCAGGGTCTTGAACCCGAAGAAGTTATAGGAGAAATC 17918532 Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGT 72689 || ||| | || || | || ||||| || || | | | ||| || || | || Sbjct 17918531 GCGGTCGAAGATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGCGT 17918472 Query 72690 GATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAAT 72748 | ||| || || || ||||| || | ||| || || || |||||| | | | Sbjct 17918471 -CTCCTTGGAGATCATGGGAGAGTGGCGTCTATTCAAGGGGTTGACGTAGTTGTACAGGT 17918413 Query 72749 CCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTC 72808 |||||||||| ||||| || | || || || || ||||| || ||||| ||||| || | Sbjct 17918412 CCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATCC 17918353 Query 72809 TGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTG 72868 || || || ||||| || || || || | || || ||||| || || ||||| | Sbjct 17918352 GTGCAGCGAGGATGGCGTAGTCGGGGTGCTTGGTTGTGAGGGTGGCGGCGATCTCTGCGG 17918293 Query 72869 CCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 72928 |||| ||||| | || || ||||| || || | || | || ||||| |||||||| | Sbjct 17918292 CCAGCGTGTCGAGCTCCACGGTTGTGACGCCGCTGTACAAACCCTGGATCACCTTCATCG 17918233 Query 72929 CTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAG 72988 || | | ||||| | | |||| ||| | || || || | || || |||| Sbjct 17918232 TAATCTGGGTCGGATCCACAAAGTCAGAGTTCAGCCCGTAGCACAGCTTCTGGATGCGAG 17918173 Query 72989 ACGTGATTTTATCAAACATAACATTTTCCCGGCATCCATTTCGTTTAAC-GACAAACATT 73047 ||||||||||||| ||||| || || ||| ||||| | | ||| ||||| ||| Sbjct 17918172 ACGTGATTTTATCGAACATGACGCGCTCTTGGCGTCCATCT-GAAAAACAAACAAATATT 17918114 Query 73048 TTTGTCGGT 73056 | |||| || Sbjct 17918113 TCTGTCAGT 17918105 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || ||||| || || |||||| ||| | || || || ||||| || | Sbjct 17920912 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCCGCGATGTGGATGT 17920853 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| || || ||||||||||| || | |||||||||||| || | | |||| Sbjct 17920852 TCAGGGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCTGCAGCCATCTTGAGTACGGTCT 17920793 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | |||||||| | |||| | ||| || |||| Sbjct 17920792 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCAGGAA 17920742 >seq8 Length=22893611 Score = 96.9 bits (106), Expect = 5e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||||| || || ||||||||||| ||||| | ||||| Sbjct 22892198 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTTT 22892139 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| ||||||||||| || || || || |||| Sbjct 22892138 TCAGCCAGAAGATCGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 22892079 Query 42207 C 42207 | Sbjct 22892078 C 22892078 >seq5 Length=28395245 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| |||| ||| || || || ||||| || || || || || |||| || || || | Sbjct 12625864 CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGAGACAGCAATTCGTGCAGCCAGGA 12625923 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||| || ||||||| || || ||||| || ||||||||||||| ||||||| Sbjct 12625924 GTGCATAGTCGGGATGTTTGGTGGTGAGGGTGGCGGCAGTTTCTGCTGCCAGTGTGTCCA 12625983 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTAT 72932 || || || || || ||| | || | || ||||| |||||||| | ||| Sbjct 12625984 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCATTGTTAT 12626035 >seq23 Length=22362490 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| || ||||| | |||||||| | || || || |||||||| || | ||| | Sbjct 14674783 CCTCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCT 14674724 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||| | || | || ||||| || || ||||||||||| || ||||| ||||| | Sbjct 14674723 TGAGCCAATAAATGGCAGCGAATGAGCCGGAGAAGAAGATTCCCTCCACTGCTGCAAAAG 14674664 Query 42207 CAATAAGTCTCTCTCC 42222 | | || || ||| || Sbjct 14674663 CCACAATTCGCTCCCC 14674648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138990269000