Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 107 3e-18 seq5 93.3 6e-14 seq22 91.5 2e-13 seq8 89.7 8e-13 >seq4 Length=27622843 Score = 107 bits (118), Expect = 3e-18 Identities = 346/529 (65%), Gaps = 26/529 (5%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||||| ||| || || || || ||||| ||| | ||||| || || | || Sbjct 17918907 ACCAACGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTCTACAACAACACTG-CGCG 17918965 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||| ||||| ||||| || |||| || || | ||| | ||| |||| || || Sbjct 17918966 CTACGTCGACCAGGGAGGCAACAAGAGGCCCGGAGCGTTTGCCATGTACCTGGAGCCCTG 17919025 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||| || || |||||||| | ||| || || ||| | || || ||| | Sbjct 17919026 GCACTTCGATGTGTTTGACTTCTTGGAGCTGAAGAAGAACACCGGAAAGGAGGAGCAGAG 17919085 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------ 97039 ||||| ||| | || || || | ||| | ||||| ||||||||||| | || Sbjct 17919086 GGCCAGAGACCTTTTCTACGCCATGTGGATCCCAGACCTGTTCATGAAGAGAGTGGAGAG 17919145 Query 97040 CAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTG 97099 |||| || | ||||| || ||||| || || || || || ||| ||| || Sbjct 17919146 CAAC-ACAG-----ACTGGTCTCTGATGTGTCCGAACGAGTGCCCTGGGCTGGACGAGTG 17919199 Query 97100 CTGGGGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGCCGATACGT 97156 |||||| || ||||| ||| ||| ||||| | || ||| | || || || || Sbjct 17919200 CTGGGGGGAGGAGTTCGAG---AAGCTTTACACCACATATGAGAAGGAAGG--GA-GGGT 17919253 Query 97157 GAGACGAGTCG---ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGAC 97213 | || || | | || | | ||||| | ||||| | | | ||| ||| || Sbjct 17919254 CAAGCGCGTGGTGAAGGCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACAGAAAC 17919313 Query 97214 TGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTT 97273 || || |||||||| || ||||| || || || | || |||||||| | | | Sbjct 17919314 CGGTACGCCGTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCT 17919373 Query 97274 GGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 |||||||||||| || ||| || ||||| ||||| || |||||| || Sbjct 17919374 GGGCACCATCAAAAGCAGCAACCTCTGCACAGAAATAGTTGAGTACACC 17919422 >seq5 Length=28395245 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 |||||| | ||||| | | ||||| |||||| || || || ||||| ||||||||| Sbjct 12623765 CTGTGGTACACCATCATTGAGTCTCAGACAGAGACCGGTACGCCATACATGCTCTACAAG 12623706 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 || || || | || |||||||| | | ||||||||||||| | ||||||| Sbjct 12623705 GACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTG 12623646 Query 97299 TGCACGGAAATTGTAGAGTAC 97319 |||||||| |||||||||||| Sbjct 12623645 TGCACGGAGATTGTAGAGTAC 12623625 >seq22 Length=23067096 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| |||||||| ||||||||||| || || || |||||||| |||||||| || Sbjct 3938935 GAAGCCGTGTGTCAGGTGACCTCCGTCGGGAAGGTCCAGCCCCATGATCCTACCGTGAGG 3938994 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGC 127535 | |||||| | ||||| || |||||||| || Sbjct 3938995 CTCAACGATGGCCGTGTAGACAGCAAAGTTAGC 3939027 >seq8 Length=22893611 Score = 89.7 bits (98), Expect = 8e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 ||||||| ||||||||||| ||||| |||||||| || ||| || || || ||||| | Sbjct 22892073 TGGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCGATCTTCT 22892132 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||| || ||| | || || |||||||||||||| Sbjct 22892133 GGCTGAAAAAGAGAGGCCTGATGCCCGGACTGAC 22892166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058968419000