Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4 499 4e-136 seq8 114 2e-20 seq23 105 8e-18 >seq4 Length=27622843 Score = 499 bits (552), Expect = 4e-136 Identities = 1283/1943 (66%), Gaps = 21/1943 (1%) Strand=Plus/Minus Query 62274 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62333 ||||| ||||| || |||| | | |||||| || | || | || || || ||||| Sbjct 17920084 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTC 17920025 Query 62334 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62393 || | ||||| |||||||| | || || || ||||| || || ||||| || | ||| Sbjct 17920024 ACGATCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 17919965 Query 62394 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62453 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 17919964 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 17919905 Query 62454 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-AGGTTCCCAATTCCAA-A 62511 | || || || | |||| | ||| || || || || | |||| | |||| | Sbjct 17919904 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGACCTTCC--AGTCCAGCA 17919847 Query 62512 GATCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGA 62569 | || | || | | | || || || || || ||| | || Sbjct 17919846 GGTCGGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGGGA 17919789 Query 62570 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 62629 ||| | || || ||||| || || || |||| || || || |||||||| | || Sbjct 17919788 GCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCAGCCAGCTCGCAGCTCGCCTCCAGGGC 17919729 Query 62630 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAA 62689 |||| || ||||| || ||||| | | || || || || || |||| || || Sbjct 17919728 GGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCAGGGCTTTCGAA 17919669 Query 62690 TGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCT 62749 || || | ||| || || ||||| || || || || || || || ||||| || || Sbjct 17919668 CGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGGACGCCGATTCCGATCGGCCT 17919609 Query 62750 ATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 62809 || | ||| || || | || ||||| || | || || || ||||| || ||||| || Sbjct 17919608 GTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTAATTTCGATAATCTT 17919549 Query 62810 ATTGAGATTTCTGACAATTACTTTGACCACA--TCCTTCAGTTTGAGAAAATCAAAT--- 62864 || | ||| |||| ||||||||| |||| | || ||||| ||| ||||| Sbjct 17919548 GTTCAAGTTTTTGACGATTACTTTGGTCACAAATGCT--AGTTTTTTAAAGTCAAAAGTC 17919491 Query 62865 CGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCA 62924 ||| || | || ||||||| | || | || ||||||||||| || ||||||||| Sbjct 17919490 CGCTCAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCA 17919431 Query 62925 TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAA 62984 | | | || | | ||| || ||||| || || || | ||||| || || | | Sbjct 17919430 TCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGA 17919371 Query 62985 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 63044 || || || || ||||| |||| || || || || || || ||| | || ||||| ||| Sbjct 17919370 TTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTT 17919311 Query 63045 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTAT 63104 || |||| || || ||||| || | ||| || ||||||| | | ||| Sbjct 17919310 TCTGTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGCTTGACC 17919251 Query 63105 CTCCTTTCTCTTTCGTATAGTGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTC 63163 |||| ||| | || ||| || || || | | |||||||| || ||||| | ||| Sbjct 17919250 CTCCCTTCCTTCTCATATGTGGTGTA-AAGCTTCTCGAACTCCTCCCCCCAGCACTCGTC 17919192 Query 63164 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63223 || ||||| || || | ||||||||||| ||||| ||| || || ||||| || Sbjct 17919191 CAGCCCAGGGCACTCGTTCGGACACATCAGAGACCAGTCTGTGTTGCTCTCCACTCTCTT 17919132 Query 63224 CATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGT 63282 ||| || || || || ||||| | || || ||| || ||||||| || || ||||| | Sbjct 17919131 CATGAACAGGTCTGGGATCCACATGGCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCT 17919073 Query 63283 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63342 |||| || ||||| || || || | ||| | | | ||| | ||||| || |||| || Sbjct 17919072 TTCCGGTGTTCTTCTTCAGCTCCAAGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGT 17919013 Query 63343 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63402 | ||||| | |||| |||| ||||| |||||||| || | ||| | || ||||| | Sbjct 17919012 ACATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAGCGCGCAGTGTTGT 17918953 Query 63403 TATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGC 63462 | || ||||||| ||| || | | ||||| || | || ||||| |||| |||||||| Sbjct 17918952 TGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATATAGC 17918893 Query 63463 TTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63522 | || | | | || || | | | || |||||||| ||| || ||||| | Sbjct 17918892 TCCCCGTCGATCTGATGCAGCTGACCGCCACGCCAATTCCCCCGGCCGACTTGGAGATGA 17918833 Query 63523 ATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTA 63582 || || | || | |||||| || || || || ||||| || || ||||| || | Sbjct 17918832 GGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCA 17918773 Query 63583 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63642 | || ||||| |||| || | | | |||||||| || || | ||||| ||||||| Sbjct 17918772 GGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTAGGGGAAGCGT 17918713 Query 63643 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63702 | || ||||| || || || || || |||||||||||||| |||| || || ||| || Sbjct 17918712 GGGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTGCGTTGATGTCCGTTT 17918653 Query 63703 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63762 || || || || | || | ||| | ||||||||| || | || | | ||| || Sbjct 17918652 TGTGGATCCCAACAGATACTCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTGCCGT 17918593 Query 63763 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63822 | || ||||||| |||||| |||| || || || || || |||| || || || | Sbjct 17918592 TGATCTTCAACAGGTAGGACCGCTCCAGGGTCTTGAACCCGAAGAAGTTATAGGAGAAAT 17918533 Query 63823 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGG 63882 | || ||| | || || | |||||||| || || | | | ||| || || | | Sbjct 17918532 CGCGGTCGAAGATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGCG 17918473 Query 63883 TGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAA 63941 | | ||| || || || ||||| || | ||| || || || |||||| | | Sbjct 17918472 T-CTCCTTGGAGATCATGGGAGAGTGGCGTCTATTCAAGGGGTTGACGTAGTTGTACAGG 17918414 Query 63942 TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATT 64001 ||||||||||| ||||| || | || || || || ||||| || ||||| ||||| || Sbjct 17918413 TCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATC 17918354 Query 64002 CTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCT 64061 | || || || ||||| || || || || | || || ||||| || || || || Sbjct 17918353 CGTGCAGCGAGGATGGCGTAGTCGGGGTGCTTGGTTGTGAGGGTGGCGGCGATCTCTGCG 17918294 Query 64062 GCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATA 64121 ||||| ||||| | || || ||||| || || | || | || || || |||||||| Sbjct 17918293 GCCAGCGTGTCGAGCTCCACGGTTGTGACGCCGCTGTACAAACCCTGGATCACCTTCATC 17918234 Query 64122 GCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAACATAATTTTCTAATACGA 64181 | || | | ||||| | | || | ||| | || || || | || || ||| Sbjct 17918233 GTAATCTGGGTCGGATCCACAAAGTCAGAGTTCAGCCCGTAGCACAGCTTCTGGATGCGA 17918174 Query 64182 GACGTGATTTTATCAAACATGAC 64204 |||||||||||||| |||||||| Sbjct 17918173 GACGTGATTTTATCGAACATGAC 17918151 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || ||||| || || |||||| || | || || || || ||||| | Sbjct 17920912 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCCGCGATGTGGATGT 17920853 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| || || || || ||||||||||| || | |||||||||||| || | | |||| Sbjct 17920852 TCAGGGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCTGCAGCCATCTTGAGTACGGTCT 17920793 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | |||||||| | |||| | ||| || |||| Sbjct 17920792 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCAGGAA 17920742 >seq8 Length=22893611 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || || |||||||| || || ||||||||||| ||||| | ||||| Sbjct 22892198 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTTT 22892139 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || | |||||| || ||||| ||||||||||| || || || || |||| Sbjct 22892138 TCAGCCAGAAGATCGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 22892079 Query 33446 C 33446 | Sbjct 22892078 C 22892078 >seq23 Length=22362490 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || || ||||| || |||||||| | || || || |||||||| || | ||| | Sbjct 14674783 CCTCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCT 14674724 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||| | |||| ||||||||| || || ||||||||||| || ||||| ||||| | Sbjct 14674723 TGAGCCAATAAATGGCAGCGAATGAGCCGGAGAAGAAGATTCCCTCCACTGCTGCAAAAG 14674664 Query 33446 CAATAAGTCTCTCTCC 33461 | | || || ||| || Sbjct 14674663 CCACAATTCGCTCCCC 14674648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947005329000