Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 165 2e-35 >seq4 Length=27622843 Score = 165 bits (182), Expect = 2e-35 Identities = 604/934 (65%), Gaps = 34/934 (4%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||| | ||||| ||||| |||||||| | ||||| || | | | || Sbjct 17918550 TTCGGGTTCAAGACCCTGGAGCGGTCCTACCTGTTGAAGATCAACGGCAAAGTGGCCGAG 17918609 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || |||||||| ||| | ||| | || || |||| ||||| |||| | | || Sbjct 17918610 CGTCCGCAGCACATGCTCATGAGAGTATCTGTTGGGATCCACAAAACGGACATCAACGCA 17918669 Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCTC-GTGTATTCACGCACGCCACGCCAACAAT 363569 || ||||| || || || || || | ||| ||||| ||||| | || || | Sbjct 17918670 GCCATTGAGACGTACAACCTGCTGTCGGAGAAGTGG-TTCACCCACGCTTCCCCTACGCT 17918728 Query 363570 GTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGA 363629 | ||| || ||||| | |||||| |||| ||||| || || ||||| || Sbjct 17918729 CTTCAACGCGGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGA 17918788 Query 363630 CGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGC 363689 ||| |||||| || || | ||||| || ||| | ||||| || || |||||| || Sbjct 17918789 CGACAGCATCGAAGGCATTTACGACACGCTGAAGCAGTGTGCCCTCATCTCCAAGTCGGC 17918848 Query 363690 AGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAAC-------AGTTACATT 363741 || |||||||| || || || | |||| |||| | || || || Sbjct 17918849 CGGGGGAATTGGCGTGGCGGTCAGC--------TGCATCAGATCGACGGGGAGCTATATC 17918900 Query 363742 CGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 |||||| || |||| || ||||| || |||||||| | || | |||| ||| Sbjct 17918901 GCCGGCACCAACGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTCTACAACAACACT 17918960 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAG 363861 ||| | |||||||||||||| || ||| | || |||||||| ||||| || ||| Sbjct 17918961 GCGCGCTACGTCGACCAGGGAGGCAACAAGAGGCCCGGAGCGTTTGCCATGTACCTGGAG 17919020 Query 363862 CCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAA 363921 || || |||| | ||||| || | ||||| ||| ||||| ||||| ||||| Sbjct 17919021 CCCTGGCACTTCGATGTGTTTGACTTCTTGGAGCTGAAGAAGAACACCGGAAAGGAGGAG 17919080 Query 363922 TTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG 363981 | | || | || || ||||| || | ||| | | |||| || |||||| | ||| Sbjct 17919081 CAGAGGGCCAGAGACCTTTTCTACGCCATGTGGATCCCAGACCTGTTCATGAAGAGAGTG 17919140 Query 363982 GAG-GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGT 364040 ||| ||| || | ||||| || | || || |||| || || || || ||| Sbjct 17919141 GAGAGCAACACAG-ACTGGTCTCTGATGTGTCCGAACGAGTGCCCTGGGCTGGACGAGTG 17919199 Query 364041 ATGGGGTGACGACT--ATGTTGCTCTATACGAAA----AGTATGAATCGGAGGGAAAGGC 364094 ||||| || || | | ||| || || | | || | ||| |||||| | || Sbjct 17919200 CTGGGGGGAGGAGTTCGAGAAGCTTTACACCACATATGAGAAGGAA-GGGAGGGTCAAGC 17919258 Query 364095 TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGAC 364154 ||| | || || ||| || | ||| ||||| || || || |||| || || Sbjct 17919259 GCGT-GGTGAA----GGCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACAGAAAC 17919313 Query 364155 AGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCT 364214 || || || || ||| |||||||||| | |||||| | ||| |||||||||| | || Sbjct 17919314 CGGTACGCCGTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCT 17919373 Query 364215 TGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACG 364273 || || | ||| || |||||||| || || || || |||| |||||| ||| | Sbjct 17919374 GGGCACCA-TCAAAAGCAGCAACCTCTGCACAGAAATAGTTGAGTACACCAGCGACGATG 17919432 Query 364274 AGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 || || || ||||| || || || |||||||| Sbjct 17919433 AGGTAGCGGTGTGTAATCTGGCCTCCATCGCGCT 17919466 Score = 86.0 bits (94), Expect = 2e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||||||||| || || || |||||||| || |||||||||| | ||||| | Sbjct 17919912 GCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCC 17919971 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || ||||| | || | ||| |||| || || ||||| |||| | | || ||| Sbjct 17919972 TACACCAGCAACATCTACACCCGCAGGGTGCTCTCTGGAGAGTTTCAGATCGTGAATCCT 17920031 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 |||| |||| || || | || | || |||||| | || ||||||||| | | Sbjct 17920032 CACCTGCTCAAAGACCTGACGGAGAGAGGACTGTGGAGCGAGGAGATGAAGAACCAGCTG 17920091 Query 364930 ATCGC 364934 ||||| Sbjct 17920092 ATCGC 17920096 Score = 84.2 bits (92), Expect = 6e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 364951 CAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT 365010 |||||||| ||| |||| || |||||||||| | || |||||||| |||||||| Sbjct 17920726 CAGAACATCGAAGGGATTCCTGACGATCTGAAGCAGCTGTATAAAACCGTGTGGGAAATC 17920785 Query 365011 TCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAG 365070 ||| | || | | | ||||| || || ||||| || || ||| ||||||||| Sbjct 17920786 TCCCAGAAGACCGTACTCAAGATGGCTGCAGACCGCGGCGCCTTCATCGACCAGAGCCAG 17920845 Query 365071 TCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTAC 365130 || | ||| | ||| | |||| | || || ||| || || |||||| |||||| Sbjct 17920846 TCCCTGAACATCCACATCGCGGAGCCCAACTACGGCAAACTGACCAGCATGCACTTCTAC 17920905 Query 365131 GGGTGGAAA 365139 || |||||| Sbjct 17920906 GGCTGGAAA 17920914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353182519550