Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq10 188 1e-42 seq5 168 1e-36 seq8 87.8 3e-12 >seq10 Length=23202889 Score = 188 bits (208), Expect = 1e-42 Identities = 180/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || ||||| |||| ||| || |||||||| || |||||||| || |||||| Sbjct 4416080 CCTCCTCTGAGACGCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 4416021 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| || || | || ||||| || || Sbjct 4416020 AGAGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 4415961 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| ||||| || || ||||| ||||| ||| |||||||||||| ||| | || || Sbjct 4415960 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTGGGCTCCAC 4415902 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || |||||||| |||||||| |||||||| Sbjct 4415901 CTCCAGGGTGATGGTCTTACCAGTGAGGGTTTTGACGAAGATCTGCAT 4415854 Score = 165 bits (182), Expect = 2e-35 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || || | |||| ||| || |||||||| || |||||||| || |||||| Sbjct 4415852 CCTCCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 4415793 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| || || | || ||||| || || Sbjct 4415792 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 4415733 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTAC 68413 ||||| |||||||| || ||||| || ||||| || |||||||| |||| || || Sbjct 4415732 ATGCCCTCCTTGTCCTGGATCTTAGCTTTGACATTTTCAATGGTGTC-GCTGGGCTCCAC 4415674 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || || |||||||| || || |||||||| Sbjct 4415673 CTCCAAGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 4415626 >seq5 Length=28395245 Score = 168 bits (186), Expect = 1e-36 Identities = 165/209 (79%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || |||||||| || || ||||| || | |||||||| | Sbjct 9215382 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 9215441 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || || || || || || || ||||||||||||||||| || | Sbjct 9215442 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 9215501 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432 |||| ||||| ||| ||| |||||||| ||| | || || |||||||||||||| || Sbjct 9215502 TCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGGGCTCAACCTCCAAGGTGATGGTCTTG 9215560 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||||||||| || |||||||| Sbjct 9215561 CCAGTCAGGGTCTTGACAAAGATCTGCAT 9215589 Score = 168 bits (186), Expect = 1e-36 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || | || |||| || | || || |||||||| || |||||||| || || | Sbjct 9219821 TTCCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 9219880 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | |||||||| | |||||| || || || || || || || || || || | Sbjct 9219881 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 9219940 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCT 68411 |||||||||||||||| || ||||| ||||| ||| ||| |||||||| ||| | || Sbjct 9219941 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGGGCTCG 9219999 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||||||||| || || || ||||||||||| || |||||||| Sbjct 9220000 ACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 9220049 Score = 163 bits (180), Expect = 5e-35 Identities = 164/209 (78%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| ||||||||||| || || ||||| || | |||||||| | Sbjct 9220070 CAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 9220129 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || || || || || || || ||||||||||||||||| || | Sbjct 9220130 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 9220189 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432 |||| ||||| ||| ||| |||||||| ||| | || || || | ||||||||| || Sbjct 9220190 TCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGGGCTCGACCTCGAGGGTGATGGTCTTA 9220248 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 9220249 CCAGTCAGGGTCTTAACGAAGATCTGCAT 9220277 Score = 163 bits (180), Expect = 5e-35 Identities = 164/209 (78%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| ||||||||||| || || ||||| || | |||||||| | Sbjct 9220298 CAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 9220357 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || || || || || || || ||||||||||||||||| || | Sbjct 9220358 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 9220417 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432 |||| ||||| ||| ||| |||||||| ||| | || || || | ||||||||| || Sbjct 9220418 TCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGGGCTCGACCTCGAGGGTGATGGTCTTA 9220476 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 9220477 CCAGTCAGGGTCTTAACGAAGATCTGCAT 9220505 Score = 163 bits (180), Expect = 5e-35 Identities = 164/209 (78%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| ||||||||||| || || ||||| || | |||||||| | Sbjct 9220526 CAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 9220585 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || || || || || || || ||||||||||||||||| || | Sbjct 9220586 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 9220645 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432 |||| ||||| ||| ||| ||||| || ||| | || || || | ||||||||| || Sbjct 9220646 TCTTGGCCTTCACGTTCTCAATGGTATC-GCTGGGCTCGACCTCGAGGGTGATGGTCTTG 9220704 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||||||||| || |||||||| Sbjct 9220705 CCAGTGAGGGTCTTGACAAAGATCTGCAT 9220733 Score = 161 bits (178), Expect = 2e-34 Identities = 182/241 (76%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 68223 TGATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATG 68282 |||||| | | || || | || |||| || | || || || ||||| || |||||| Sbjct 9219583 TGATTTCACTGCCCACCCCTCAGACGCAGGACAAGATGGAGGGTTGACTCCTTCTGGATG 9219642 Query 68283 TTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGT 68342 || || || ||||| || | |||||||| | |||||| || || || || || || || Sbjct 9219643 TTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGC 9219702 Query 68343 TGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCT 68402 || || || ||||||||||||||||| || ||||| ||||| ||| ||| |||||||| Sbjct 9219703 TGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC- 9219761 Query 68403 GCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | || || || | ||||||||| || || |||||||||||||| || |||||||| Sbjct 9219762 GCTGGGCTCGACCTCGAGGGTGATGGTCTTACCGGTGAGGGTCTTGACAAAGATCTGCAT 9219821 Query 68462 T 68462 | Sbjct 9219822 T 9219822 Score = 159 bits (176), Expect = 6e-34 Identities = 163/209 (78%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || |||||||| || || ||||| || | |||||||| | Sbjct 9215610 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAA 9215669 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || || || || || || || ||||||||||||||||| || | Sbjct 9215670 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 9215729 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432 |||| ||||| ||| ||| |||||||| ||| | || || || | ||||||||| || Sbjct 9215730 TCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGGGCTCGACCTCGAGGGTGATGGTCTTA 9215788 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 9215789 CCAGTCAGGGTCTTAACGAAGATCTGCAT 9215817 Score = 159 bits (176), Expect = 6e-34 Identities = 161/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || |||||||| || || ||||| || | |||||||| | Sbjct 9215838 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 9215897 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || || || || || || || ||||||||||||||||| || | Sbjct 9215898 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 9215957 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||| ||| ||| ||||| || || || || || | ||||||||| || | Sbjct 9215958 TCTTGGCCTTCACGTTCTCAATGGTATCACTTGGCTCGACCTCGAGGGTGATGGTCTTGC 9216017 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||||| || |||||||| Sbjct 9216018 CAGTGAGGGTCTTGACAAAGATCTGCAT 9216045 >seq8 Length=22893611 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||||||| | |||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 22893461 CATGACGCCCATCCTCTGGTACTCGCCGACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTC 22893402 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || || ||| |||||||||||| ||||||||||| Sbjct 22893401 CAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTCTC 22893366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622111993000