Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 529 3e-145 seq8 118 2e-21 seq5 118 2e-21 seq23 84.2 4e-11 >seq4 Length=27622843 Score = 529 bits (586), Expect = 3e-145 Identities = 1002/1458 (69%), Gaps = 46/1458 (3%) Strand=Plus/Minus Query 243992 CCTTCGATG--TT--CTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATC 244047 ||||||||| || ||| | || || ||||| |||| |||||| | ||| | || Sbjct 17920130 CCTTCGATGGATTACCTGAATGGACCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTC 17920071 Query 244048 GTTCCACAGGCCCAAGCGCTCC---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAA 244104 | ||||||| || | |||| || | | || |||||| ||||| | |||||| Sbjct 17920070 GCTCCACAGTCCT---CTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTCACGATCTGAAA 17920014 Query 244105 CTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGT 244164 |||||| || ||||| | ||| ||||| ||||||| || | |||||| ||| | Sbjct 17920013 CTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTT 17919954 Query 244165 GTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCT 244224 ||||||||| ||||| || ||| || || ||||| || | || |||||| |||||||| Sbjct 17919953 GTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCT 17919894 Query 244225 CACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAG-GT 244283 |||||||||| | ||| | || | ||||||||| || | | | | | || Sbjct 17919893 CACGCCGTGCTTGGCGATCTTCTCCTTCAGGACCTTCCAGTCCAGCAGGTCGGTGGGCGT 17919834 Query 244284 CCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCT 244343 | || | ||||||||| |||| || | ||||||||||| ||| ||| | Sbjct 17919833 CTTCTC----------CCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGGGAGCCTT 17919784 Query 244344 CGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCCAGCTTACAGCTCTCGTCGAGGGCGGCG 244402 |||| ||| |||||| ||| || | | ||||||| |||||| | || ||||||||| Sbjct 17919783 CGTACGTCTCGTAGGGGCCGA-GCTCAGCAGCCAGCTCGCAGCTCGCCTCCAGGGCGGCG 17919725 Query 244403 TAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG-GCCTTGCCGCAGGTGAAGGG 244461 |||||||||||||| ||||| |||||| | || | |||| || ||| || Sbjct 17919724 TAGTAGATGGTCTCAAAGATTTGAATGTTCA-GCAGCTGAGCCTCAGGGCTTTCGAACGG 17919666 Query 244462 GATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTG 244521 | || ||| | |||||| |||| |||| ||||| |||||||| ||||| || ||||| Sbjct 17919665 GTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGGACGCCGATTCCGATCGGCCTGTG 17919606 Query 244522 TCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTT 244581 ||||||||||| | ||||| ||||| ||||| |||| ||||| | |||||| Sbjct 17919605 GCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTAATTTCGATAATCTTGTT 17919546 Query 244582 GAGGTTGCGGGTGATCA-TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGG 244640 | ||| | ||| | | || | || || || | |||||| | || | Sbjct 17919545 CAAGTTTTTGACGATTACTTTGGTC-ACAAATGCTAGTTTTTTAAAGTCAAAA--GTCCG 17919489 Query 244641 GATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGA 244700 ||| | | || || || |||||| |||| | |||||| || || | Sbjct 17919488 ----CTCAGGGGTG---------ACGTACATGTTGAGCGCGATGGAGGCCAGATTACACA 17919442 Query 244701 CGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGA 244760 | || ||||| || | ||||||||| || || || ||||||||||| |||| |||| Sbjct 17919441 CCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGA 17919382 Query 244761 TGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGG 244820 |||||||||| | ||| || ||| ||| |||||||||||| ||||| |||||| | | Sbjct 17919381 TGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACG 17919322 Query 244821 GCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCG 244880 || ||||| || ||||| ||| | | || ||| | | | |||||| ||| Sbjct 17919321 GCGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCA 17919262 Query 244881 TCCTGCGAG-CCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCC 244939 | || | || | || || ||| || |||||| || ||||||||| ||| Sbjct 17919261 CGC-GCTTGACCCTCCCTTCCTTCTCATATGTGGTGTAAAGCTTCTCGAACTCCTCCCCC 17919203 Query 244940 CAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCC 244999 ||| |||||| || || |||||| ||| ||||| ||| ||| || | | | Sbjct 17919202 CAGCACTCGTCCAGCCCAGGGCACTCGTTCGGACACATCAGAGACCAGTCTGTGTTGCTC 17919143 Query 245000 TTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTC 245059 | || |||| |||||| ||||| |||||||| | ||| | ||| ||||| |||| |||| Sbjct 17919142 TCCACTCTCTTCATGAACAGGTCTGGGATCCACATGGCGTAGAAAAGGTCTCTGGCCCTC 17919083 Query 245060 TGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAG 245119 ||||| ||| || ||||||||| |||||||||| |||||||| || |||| ||||||| Sbjct 17919082 TGCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAAGAAGTCAAACACATCGAAGTGCCAG 17919023 Query 245120 GGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTC 245179 ||||||| ||| | || | || ||||||| |||||||||||||||||| || | | Sbjct 17919022 GGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAGCGC 17918963 Query 245180 TCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCC 245238 | || | |||| ||| | ||| | || || | ||||| |||| |||||||||||| Sbjct 17918962 GC-AGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCC 17918904 Query 245239 CTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTG 245298 ||| ||| ||| | |||| | ||||| | || ||| | ||| ||||| Sbjct 17918903 GGCGATATAGCTCCCCGTCGATCTGATGCAGCTGACCGCCACGCCAATTCCCCCGGCCGA 17918844 Query 245299 CTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTT 245358 ||||||||||||||| || ||| | ||||| ||||| || |||||||| || Sbjct 17918843 CTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTT 17918784 Query 245359 CATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGT 245418 |||| |||||| |||||| ||||||||| ||| || | | | || |||||| || || Sbjct 17918783 CATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGT 17918724 Query 245419 GGGGCTGGCGTGGGTAAA 245436 ||| |||||||| || Sbjct 17918723 AGGGGAAGCGTGGGTGAA 17918706 >seq8 Length=22893611 Score = 118 bits (130), Expect = 2e-21 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||| ||||||| ||||| ||||||||||| || ||||||| | ||||||| Sbjct 22892073 TGGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCGATCTTCT 22892132 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| || ||| ||| | |||||||||||| |||||||| ||||| || |||||||| Sbjct 22892133 GGCTGAAAAAGAGAGGCCT-GATGCCCGGACTGACCTTCTCCAACGAGCTGATCAGCAGA 22892191 Query 42825 GACGAGG 42831 ||||||| Sbjct 22892192 GACGAGG 22892198 Score = 96.9 bits (106), Expect = 7e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 22893371 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 22893430 Query 43130 CGTCGCCGACTACCAG 43145 |||| ||| |||||| Sbjct 22893431 GGTCGGCGAGTACCAG 22893446 >seq5 Length=28395245 Score = 118 bits (130), Expect = 2e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 |||||||||||| |||||||| | ||| ||| ||||| |||| ||||||||| || Sbjct 12624148 CATGAAGAGGTCTGGGATCCACATGGCGAAGAACAGGTCTCTGGCCCTCTGCTCCTCTTT 12624207 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 || ||||||||| ||| ||| | |||||||| || |||| ||||| ||||||| ||| Sbjct 12624208 ACCTGTGTTCTTCTTCAACTCTAGGAAGTCAAACACATCGAAATGCCACGGCTCCAGGTA 12624267 Query 245131 GACAGCGAGGGCGCCGGG 245148 ||||||| ||| ||||| Sbjct 12624268 CACAGCGAAGGCCCCGGG 12624285 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||||||||| || || | ||| ||||| ||||||| || ||||| ||| Sbjct 12622137 ACCTGAAACTCTCCCGAGAGTACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCAATG 12622196 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || ||| || || |||||||| | || |||||| Sbjct 12622197 GACTCGTTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGA 12622256 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| || ||||| Sbjct 12622257 CTGTTCCTCACACCATGCCT 12622276 Score = 107 bits (118), Expect = 4e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| |||||||| ||||| || || ||| | |||||||||||||| | ||| || Sbjct 12623623 GTGTACTCTACAATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGG 12623682 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 ||| ||| ||||||||||||||||||||||||| | ||| |||||||| ||| Sbjct 12623683 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTACCGGTCTCTGTCTGA 12623742 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879 | | | || | ||| ||| || | | |||||| ||| Sbjct 12623743 GACTCAATGATGGTGTACCACAGCTGCTGAGCCTTCACC 12623781 >seq23 Length=22362490 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || || ||| | || || ||||| ||||||||||| ||| | ||||| |||| | ||| Sbjct 14674660 GTGGCTTTTGCAGCAGTGGAGGGAATCTTCTTCTCCGGCTCATTCGCTGCCATTTATTGG 14674719 Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| ||| ||| | ||||| || || |||| ||| ||||| || || |||||||| Sbjct 14674720 CTCAAGAAGAGAGGACT-AATGCCTGGCCTTACCTACTCCAACGAGCTGATTAGCAGGGA 14674778 Query 42827 CGAGG 42831 |||| Sbjct 14674779 TGAGG 14674783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338904894000