Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4 242 4e-59 seq5 98.7 1e-15 >seq4 Length=27622843 Score = 242 bits (268), Expect = 4e-59 Identities = 1028/1592 (65%), Gaps = 49/1592 (3%) Strand=Plus/Plus Query 93733 TTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCCGAGCGACCG 93792 ||||| || |||||| ||| ||||| | ||||| | |||| || ||||||| ||| Sbjct 17918556 TTCAAGACCCTGGAGCGGTCCTACCTGTTGAAGATCAACGGCAAAGTGGCCGAGCGTCCG 17918615 Query 93793 CACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGC-CGAATGTTTT 93851 || || |||| ||| | || | | ||||| ||| ||||| || | || Sbjct 17918616 CAGCACATGCTCATGAGAGTATCTGTTGGGATCCACAAAACGGACATCAACGCAGCCATT 17918675 Query 93852 GCGGGCTTTCAGAGACATGCGG---GACAAGAGGTATACCATGGCCACCCCGACCCTGTT 93908 | | | | || || ||| | || ||| ||| ||| || |||| || || || Sbjct 17918676 GAGA-CGTACA---ACCTGCTGTCGGAGAAGTGGTTCACCCACGCTTCCCCTACGCTCTT 17918731 Query 93909 CAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGA 93968 ||||||||| ||| ||||||| |||| || |||||| | | | || | ||| Sbjct 17918732 CAACGCGGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGA 17918791 Query 93969 CTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGG 94028 | |||| || |||| ||||| || ||| | ||||| |||||| || | || || Sbjct 17918792 CAGCATCGAAGGCATTTACGACACGCTGAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGG 17918851 Query 94029 GGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAA 94088 |||||| || | ||| | | | | | | ||| ||| ||| ||| ||||| Sbjct 17918852 GGGAATTGGCGTGGCGGTCAGCTGCATCAGATCGACGGGGAGCTATATCGCCGGCACCAA 17918911 Query 94089 TGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGT 94148 |||| ||||||||| |||||||| ||||| | |||| ||||||| | ||||||||||| Sbjct 17918912 CGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTCTACAACAACACTGCGCGCTACGT 17918971 Query 94149 GGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGC 94208 |||||||| || | |||| || | || || | || || |||||||||||| Sbjct 17918972 CGACCAGGGAGGCAACAAGAGGCCCGGAGCGTTTGCCATGTACCTGGAGCCCTGGCACTT 17919031 Query 94209 GGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAG 94268 || ||| | ||| | || ||| |||||| ||| || || | |||||||||| Sbjct 17919032 CGATGTGTTTGACTTCTTGGAGCTGAAGAAGAACACCGGAAAGGAGGAGCAGAGGGCCAG 17919091 Query 94269 AGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTC 94328 |||||| |||||||| | ||| | |||||||| || ||||| | || |||| ||| | Sbjct 17919092 AGACCTTTTCTACGCCATGTGGATCCCAGACCTGTTCATGAAGAGAGTGGAGAGCAACAC 17919151 Query 94329 CGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA-CGTTTGTGGATCGC 94387 | |||| ||| | ||||| || || || || || ||| ||| | | | || | Sbjct 17919152 AGACTGGTCTCTGATGTGTCCGAACGAGTGCCCTGGGCTGGACGAGTGCTGGGGGGAGGA 17919211 Query 94388 GTT-TTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGAT 94446 ||| |||| ||| || | || || | | || | || || | || || | Sbjct 17919212 GTTCGAGAAG-CTT-TACACCACATATGAGAAGGAAGGGAGGGTCAAGCGCGTGGTGAAG 17919269 Query 94447 GCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATC 94506 ||| | || ||||| | || | || ||| || || |||||||| ||||| Sbjct 17919270 GCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACAGAAACCGGTACGCCGTACATG 17919329 Query 94507 TTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGC 94566 ||| ||| ||| | |||| ||| |||||||||| | || || ||||| ||| Sbjct 17919330 CTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAAAGC 17919389 Query 94567 TCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG--GACGAGATTGCTGTGTGTA 94624 || || ||||| || || || ||||| || | || || ||| | || ||||||| Sbjct 17919390 AGCAACCTCTGCACAGAAATAGTTGAGTACAC--CAGCGACGATGAGGTAGCGGTGTGTA 17919447 Query 94625 ACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT-ACACGTCTACTGCTTCG 94683 | |||| ||||||| | || || | || || | ||| | | || || | Sbjct 17919448 ATCTGGCCTCCATC--GCGCTCAACAT--GTACGTCACCCCTGAGCGGACTTTTG--ACT 17919501 Query 94684 TTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAG-GATGGTCTTGAACCTGAACAGGGT 94742 || | || | |||||| | ||| || ||| ||| |||||| | | Sbjct 17919502 TTAAAAAACTAGCA-TTTGTGACC-------AAAGTAATCGTCAAAAACTTGAACAAGAT 17919553 Query 94743 AATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCC 94802 ||||| | |||| |||||| || || || |||||||| || ||| | || |||| Sbjct 17919554 TATCGAAATTAACTACTACCCAGTGCCTGAAGCGGAGAAGTCCAACAAGCGCCACAGGCC 17919613 Query 94803 CATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCC-TACG 94861 ||||| ||||||||||||||||| || ||||| | | | ||||| || ||| | || Sbjct 17919614 GATCGGAATCGGCGTCCAGGGTTTGGCAGACGCCTTCATCCTCATGCG-CTACCCGTTCG 17919672 Query 94862 A---CTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGG 94918 | | ||| | | | || | |||| | | || || || | ||| || |||| | Sbjct 17919673 AAAGCCCTG-AGGCTCAGCTG--CTGAACATTCAAATCTTTGAGACCATCTACTACGCCG 17919729 Query 94919 CCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGC 94977 || | || | | | | | | |||| | || ||| || |||| ||| | Sbjct 17919730 CCCTGGAGGCGAGCTG-CGAGCTGGC---TGCTGAGCTCGGCCCCTACGAGACGTACGAA 17919785 Query 94978 GGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGT 95037 || || || | ||||||| | |||| |||| | |||| || |||| | | Sbjct 17919786 GGCTCCCCGGTCAGCAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACGCCCACCGAC 17919845 Query 95038 CTGTACGACTGGGAAGCTCTACGCGCTGATG-TTATCAAACACGGTGTGAAAAACGCGCT 95096 ||| |||| ||||| || | || | | ||| ||||| |||| ||| || Sbjct 17919846 CTGCTGGACT-GGAAGGTCCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCT 17919904 Query 95097 GCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTT 95156 ||| ||||||| ||||||||||||||||| || |||||||| |||||||||||||| | Sbjct 17919905 GCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCAT 17919964 Query 95157 CGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCAT 95216 |||| ||| |||| |||| | |||| | | |||||||| | || || || | || | Sbjct 17919965 CGAAGCCTACACCAGCAACATCTACACCCGCAGGGTGCTCTCTGGAGAGTTTCAGATCGT 17920024 Query 95217 CAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAA 95276 || ||||| || ||||||||| || ||||| | || || | ||||| Sbjct 17920025 GAATCCTCACCTGCTCAAAGACCTGACGGAGAGAGGACTGTGGAGCGAGGAGATGAAGAA 17920084 Query 95277 CCAACTGCTACGCGC-CAACGGCTCCGTCCAG 95307 ||| ||| | ||| | |||||| ||| | ||| Sbjct 17920085 CCAGCTGAT-CGCTCACAACGGGTCCATTCAG 17920115 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 93331 GTCATGTTCGACAAGATCACTACCAGGGTGCGCAAACTTTGCGAGGGTCTGGACTCTGAC 93390 ||||||||||| || ||||| | | | | || || ||| | || ||| |||||||| Sbjct 17918151 GTCATGTTCGATAAAATCACGTCTCGCATCCAGAAGCTGTGCTACGGGCTGAACTCTGAC 17918210 Query 93391 TTCGTGGATCCCGTCGAGGTCACCATGAGAGTGAATCAGGGAATATATGCCGGGGTCACA 93450 || |||||||| | || | || |||| |||| ||||| | || ||| |||||| Sbjct 17918211 TTTGTGGATCCGACCCAGATTACGATGAAGGTGATCCAGGGTTTGTACAGCGGCGTCACA 17918270 Query 93451 ACTGTCGAGCTCGATCTTCTGGCCGCGGAGACTTGTGCCTTCATGAGTACGAATCACCCG 93510 || || |||||||| |||||||| |||| ||| | | | || || ||||| Sbjct 17918271 ACCGTGGAGCTCGACACGCTGGCCGCAGAGATCGCCGCCACCCTCACAACCAAGCACCCC 17918330 Query 93511 GACTACTCCATTTTGGCTGCTCGAATC 93537 |||||| |||| | ||||| || ||| Sbjct 17918331 GACTACGCCATCCTCGCTGCACGGATC 17918357 >seq5 Length=28395245 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 || ||||||| ||| ||||| |||||||||||||||| || ||||| || |||||| Sbjct 12622273 CATGGTGTGAGGAACAGTCTGCTCTTGGCCCCCATGCCCACAGCTTCCACTGCCCAGATC 12622214 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||||||||| | || |||| |||| |||| | |||| | | |||| ||| Sbjct 12622213 CTGGGCAACAACGAGTCCATTGAGCCCTACACCAGCAACATCTACACCCGCAGGGTACTC 12622154 Query 95197 GCCGGGGAATTCCCCGTCATCA 95218 | || || || | |||| || Sbjct 12622153 TCGGGAGAGTTTCAGGTCAGCA 12622132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723045399000