Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4 192 6e-44 seq10 104 2e-17 seq5 84.2 2e-11 >seq4 Length=27622843 Score = 192 bits (212), Expect = 6e-44 Identities = 910/1435 (63%), Gaps = 58/1435 (4%) Strand=Plus/Minus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | ||| | ||| ||||| ||||| || || || || |||| || || Sbjct 17919982 TTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTG 17919923 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 ||||| |||| || || |||| || ||||||| || | ||||||| Sbjct 17919922 GGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGG 17919863 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 ||| ||| ||| ||| | | || ||| | ||||||||||||||| | | || Sbjct 17919862 ACCTTCCAGTCCAGCAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCC 17919803 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGG-GCCAGTTCGCA 153313 ||| | || ||| | |||| |||| |||| || | ||||| ||||| Sbjct 17919802 TTGCTGACCGGGGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCAGCAGCCAGCTCGCA 17919744 Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373 ||| ||||| || ||| | ||||| ||||| || |||||| | || || | || Sbjct 17919743 GCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGC 17919684 Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433 || ||| ||| |||| ||||| || | |||||||| |||| |||||||| || Sbjct 17919683 CTCAGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGGACGCC 17919624 Query 153434 GACGCCGATGGGTCGATGCTTCTCGTTG-----CTGCGCCTCGCGCTCGCTATGGGATAG 153488 || ||||| || | || || |||| || ||| || || | |||| ||| Sbjct 17919623 GATTCCGATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCAC----TGGG-TAG 17919569 Query 153489 TGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGT 153548 | || |||||||| ||||| | ||| || | ||||| || | ||| Sbjct 17919568 TAGTTAATTTCGATAATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACAAATGCTAGT 17919509 Query 153549 TTCTCGAAATCATAGGTCATTTCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGC 153607 || | || ||| | ||| || | | ||||| || || | || || || || Sbjct 17919508 TTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTAC--ATG--TTGAGCGCGATGGAGGC 17919453 Query 153608 CAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT 153667 ||||||||| || || ||| ||| || | |||||| || || || | ||||||||| Sbjct 17919452 CAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTT 17919393 Query 153668 GCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAA 153727 ||||| ||| ||| ||||| ||| ||||| ||||| || | ||||| ||||||||| | Sbjct 17919392 GCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTA 17919333 Query 153728 GAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT--------AAACCTATGC 153779 ||||||||||| ||||| || || | |||| || | ||| ||| Sbjct 17919332 CAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACACC--TGC 17919275 Query 153780 AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGT 153839 | ||| | | ||| |||| || | || || |||| ||| ||| || Sbjct 17919274 TGAGCCTTCAC---CACGCGCT--TGA-CCCTCCCTTCCTTCTCATATGTGGTGTAAAGC 17919221 Query 153840 CGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGC 153899 ||| ||||| || || |||| ||| | || || || |||| | |||||||||||| Sbjct 17919220 TTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCAGGGCACTCGTTCGGACACATCAGA 17919161 Query 153900 GACCACATATCGTCGGCGTTG------ACGCGTCGCATGAACAGATCCGGCACCCAGAGC 153953 ||||| ||| | |||| || | ||||||||| || || | ||| | Sbjct 17919160 GACCA------GTCTGTGTTGCTCTCCACTCTCTTCATGAACAGGTCTGGGATCCACATG 17919107 Query 153954 GCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGC 154013 ||||| | ||||| | ||| | |||||| || |||| ||||| | | Sbjct 17919106 GCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAAG 17919047 Query 154014 ACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC--- 154070 | | | | | ||| ||||||||| || | ||| | ||| | || || | | Sbjct 17919046 AAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTG 17918987 Query 154071 TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGG 154130 || || ||||| ||||||| |||| | | |||||| |||| | || |||||| | || Sbjct 17918986 TTGCCTCCCTGGTCGACGTAGCGCGCAGTGTTGTTGTAGACTCTCAGCATGGGGACGAGC 17918927 Query 154131 CCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACG 154190 ||| | | | |||||||||| ||| | ||| || || | ||||||| Sbjct 17918926 CCGTTGGAGTTGCCGTTGGTGCCGGCGATATAGCTCCC-----CGTCGATCTGATGCAGC 17918872 Query 154191 TTA-----ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCC 154245 | | |||||||| || ||| | |||| || ||| || || | |||||| Sbjct 17918871 TGACCGCCACGCCAATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGT 17918812 Query 154246 TGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCG 154305 ||| ||||| |||||||| ||||| | | |||||| ||| || ||| || | Sbjct 17918811 CGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTG 17918752 Query 154306 GAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCA 154365 | || |||||||| ||||| || || ||||| || ||| || | || Sbjct 17918751 GCCTGTTGGTTCCCGCGTTGAAGAGCGTAGGGGAAGCGTGGGTGAACCACTTCTCCGACA 17918692 Query 154366 TCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGC 154425 || | |||||| || ||||| | | ||| || ||| || || | | || | Sbjct 17918691 GCAGGTTGTACGTCTCAATGGCTGCGTTGATGTCCGTTTTGTGGATCCCAACAGATACTC 17918632 Query 154426 GCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATA 154480 ||||||||||||||||||||| ||||| ||| | || |||||||| || || Sbjct 17918631 TCATGAGCATGTGCTGCGGACGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTA 17918577 >seq10 Length=23202889 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | || | || | | | |||||||| || |||||||||||| Sbjct 4415852 CCTCCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 4415793 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || |||| |||| |||||||| ||||| || || Sbjct 4415792 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 4415733 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || ||| | | ||| | ||||||| | | ||||||| Sbjct 4415732 ATGCCCTCCTTGTCCTGGATCTTAGCTTTGACATTTTCAATGGTGTCGCTGGGCTCCACC 4415673 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || ||||||||||| || || ||||| |||||||| Sbjct 4415672 TCCAAGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 4415626 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| | |||||| || | || | | | |||||||| || |||||||||||| Sbjct 4416081 GCCTCCTCTGAGACGCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 4416022 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || || || || || ||||||| |||| |||||||| ||||| || || Sbjct 4416021 GAGAGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 4415962 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || ||| || || | | || | ||||||| | | |||||| Sbjct 4415961 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCAC 4415902 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || |||||||| || ||||| || || |||||||| Sbjct 4415901 CTCCAGGGTGATGGTCTTACCAGTGAGGGTTTTGACGAAGATCTGCAT 4415854 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || || || || || || || | Sbjct 4416275 GACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCG 4416216 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || || || || || || ||| || ||| | Sbjct 4416215 AAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTAGCTTTGACA 4416156 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||||| | | ||||||||| | || | || |||||||| || ||||| Sbjct 4416155 TTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTGAGGGTTTTG 4416096 Query 138601 ACAAAAATCTGCATGGCT 138618 || || ||||||||| || Sbjct 4416095 ACGAAGATCTGCATGCCT 4416078 >seq5 Length=28395245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||||| || | ||| | | | ||||||||||| ||||||||||| | || || Sbjct 9220062 ACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCC 9220121 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 || || || || || || | | |||| || | ||| || || || || || ||||| || Sbjct 9220122 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 9220181 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 ||| ||| || || | | || | ||||||| | | ||| ||||||| || | Sbjct 9220182 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGAT 9220241 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || ||||||||||| || || || || |||||||| Sbjct 9220242 GGTCTTACCAGTCAGGGTCTTAACGAAGATCTGCAT 9220277 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||||| || | ||| | | | ||||||||||| ||||||||||| | || || Sbjct 9220290 ACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCC 9220349 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 || || || || || || | | |||| || | ||| || || || || || ||||| || Sbjct 9220350 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 9220409 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 ||| ||| || || | | || | ||||||| | | ||| ||||||| || | Sbjct 9220410 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGAT 9220469 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || ||||||||||| || || || || |||||||| Sbjct 9220470 GGTCTTACCAGTCAGGGTCTTAACGAAGATCTGCAT 9220505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262244918000