Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4 129 6e-25 seq10 100 3e-16 seq5 87.8 2e-12 >seq4 Length=27622843 Score = 129 bits (142), Expect = 6e-25 Identities = 485/738 (66%), Gaps = 32/738 (4%) Strand=Plus/Minus Query 146065 TTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGC 146124 || || | ||||||||| || | ||| || | | || | |||||||||| | | Sbjct 17920027 TTCACGATCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCT 17919968 Query 146125 TCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACC 146184 |||| ||||||||||| || || ||||| || || | || || ||||| |||| | Sbjct 17919967 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGC 17919908 Query 146185 AGCAAAGAGTTTCTCACGCCGTGTCTTTGA-ATCTTTTCCCGTAGTTTGGACCAATTCCA 146243 |||| ||| ||||||||||| ||| | ||||| ||| || |||| ||||| Sbjct 17919907 AGCAGGCTGTTCCTCACGCCGTG-CTTGGCGATCTTCTCCTTCAG----GACC--TTCCA 17919855 Query 146244 ---CAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCC---GCGGAA 146297 || | || ||||| | | | ||||||| || | |||| || || Sbjct 17919854 GTCCAGCAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGAC 17919795 Query 146298 CAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTTG-GCCAGTTCGCAGCTAG 146356 | ||| || | |||||| || || || ||| | || ||||| |||||||| | Sbjct 17919794 CGGGGAGCCTT---CGTACGTCTCGTAGGGGCCGA-GCTCAGCAGCCAGCTCGCAGCTCG 17919739 Query 146357 CTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTA-GTTGACGCTCCTG-GCCTC 146414 | ||||| || | |||| |||||||| ||| || | ||| | || ||| ||||| Sbjct 17919738 CCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATT-TGAATGTTCA-GCAGCTGAGCCTC 17919681 Query 146415 CTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGA 146473 ||| ||| | ||| || || | || | |||||||| || | |||||| | |||| Sbjct 17919680 AGGGCTTTCGAACGGG-TAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGGACGCCGA 17919622 Query 146474 CACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCG-CAGTGGGATAGTGGTTG 146532 || | || | ||| |||||| ||| | || | | || |||| |||| ||| Sbjct 17919621 TTCCGATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGG-TAGTAGTTA 17919563 Query 146533 CTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTC-AGCAGGAC 146591 | ||||| |||||||| | || |||| | ||| |||| | || | || Sbjct 17919562 ATTTCGATAATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACAA-ATGCTAGTTTTTT 17919504 Query 146592 ATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTT 146651 | ||||||| || | | | ||||| || |||||| ||||| ||||||| || Sbjct 17919503 AAAGTCAAAAGTCCGC---TCAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATT 17919447 Query 146652 ACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCA 146711 ||| || || ||| || | | | |||| || || || | |||||||||||||| Sbjct 17919446 ACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCT 17919387 Query 146712 CTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCAT 146771 |||||| |||||| ||| | ||||| || | ||||||||| ||| ||||| ||||| Sbjct 17919386 TTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCAT 17919327 Query 146772 GTACGGTCCCCCGGTTTC 146789 |||||| |||||||| Sbjct 17919326 GTACGGCGTACCGGTTTC 17919309 >seq10 Length=23202889 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | || ||||| || || || ||||| ||| | ||||| ||| || Sbjct 4415835 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTC 4415776 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || || ||| |||||| |||||||| || || || ||||||||||||||| Sbjct 4415775 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 4415716 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || |||| | ||| | |||||| | ||| || || | ||| | || || Sbjct 4415715 GATCTTAGCTTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTT 4415656 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || ||||| |||||||| Sbjct 4415655 ACCAGTCAGGGTCTTCACAAAGATCTGCAT 4415626 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | || ||||| || || || ||||| ||| | ||||| ||| || Sbjct 4416291 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTC 4416232 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || |||||| |||||| |||||||| || || || ||||||||||| ||| Sbjct 4416231 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTG 4416172 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || |||| | ||| | |||||| | ||| || || | ||| | || || Sbjct 4416171 GATCTTAGCTTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTT 4416112 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || || || ||||| || || ||||||||| || Sbjct 4416111 ACCAGTGAGGGTTTTGACGAAGATCTGCATGCCT 4416078 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| |||| || | || ||||| || || || ||||| ||| | ||||| | Sbjct 4416068 CGCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCA 4416009 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||||| |||||||| || || || ||||||||||| Sbjct 4416008 TCTTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTA 4415949 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | |||| |||||| | ||| || || | ||| | Sbjct 4415948 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 4415889 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || ||||| || || |||||||| Sbjct 4415888 GTCTTACCAGTGAGGGTTTTGACGAAGATCTGCAT 4415854 >seq5 Length=28395245 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739 |||| |||||||| | ||| || |||||| | |||||| |||||| ||| | ||||| Sbjct 12623626 TACTCTACAATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTG 12623685 Query 146740 CTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 || | ||||||||| |||||||||||||||||| || Sbjct 12623686 CTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGG 12623723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500651406000