Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4 174 1e-38 seq5 89.7 5e-13 >seq4 Length=27622843 Score = 174 bits (192), Expect = 1e-38 Identities = 690/1072 (64%), Gaps = 24/1072 (2%) Strand=Plus/Plus Query 123205 GCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGC 123264 ||||| |||| | | || |||||||| |||||||| |||| ||||| ||| | | || Sbjct 17918905 GCACCAACGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTCTACAACAACACTGCGC 17918964 Query 123265 GGCACGTCGACCAGGGCGGCAAACGCAA-AGGC-----GCGATGGCGATCTATCTAGAAC 123318 | ||||||||||||| ||||| ||| |||| ||| | || || || || || | Sbjct 17918965 GCTACGTCGACCAGGGAGGCAA---CAAGAGGCCCGGAGCGTTTGCCATGTACCTGGAGC 17919021 Query 123319 CGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAA 123378 | |||||| | ||||||| || || || | | || |||| || ||| || Sbjct 17919022 CCTGGCACTTCGATGTGTTTGACTTCTTGGAGCTGAAGAAGAACACCGGAAAGGAGGAGC 17919081 Query 123379 AGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAA 123438 ||| ||| | || | || ||||| | ||| | || || |||| ||| | || Sbjct 17919082 AGAGGGCCAGAGACCTTTTCTACGCCATGTGGATCCCAGACCTGTTCATGAAGAGAGTGG 17919141 Query 123439 AAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCG-GTGTCCCGGCTTGAGCGACGTT 123497 | | || | ||||| || |||||||| || || ||| || || || ||| Sbjct 17919142 AGAGCAACACAGACTGGTCTCTGATGTGTCC-GAACGAGTGCCCTGGGCTGGACGAGTGC 17919200 Query 123498 TACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAA--CAGGTTA 123555 | || | |||| || || | ||| | ||| ||| ||||| | || | Sbjct 17919201 TGGGGGGAGGAGTTCGAGAAGCTTTACACCACATATGAGAAGGAAGGGAGGGTCAAGCGC 17919260 Query 123556 GTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAA 123615 || ||| ||| | | ||| | |||||||| | || |||||||| | Sbjct 17919261 GT--GGTGAAGGCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACAGAAACCGGTA 17919318 Query 123616 CGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAA 123675 ||||||||||||| ||||||||||||||||||||||| | ||| ||| || |||| | Sbjct 17919319 CGCCGTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCA 17919378 Query 123676 CAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCAAGTGG 123735 | || ||| | || || || ||| | ||||| | || |||| | | |||| | || | Sbjct 17919379 CCATCAAAAGCAGCAACCTCTGCACAGAAATAGTTGAGTACACCAGCGACGATGAGGTAG 17919438 Query 123736 CCGTGTGTAATTTGGCTTCGATTTGCG-TGAATCGTTGCGTCGAAAACG-GCG--CTTTT 123791 | ||||||||| |||| || | | ||| | || | |||| | ||| ||||| Sbjct 17919439 CGGTGTGTAATCTGGCCTCCA-TCGCGCTCAACATGTACGTCACCCCTGAGCGGACTTTT 17919497 Query 123792 AATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAATTATC 123851 | || ||| || | | || ||| | || || || |||||||| |||||| Sbjct 17919498 GACTTTAAAAAACTAGCATTTGTGACCAAAGTAATCGTCAAAAACTTGAACAAGATTATC 17919557 Query 123852 GATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTC 123911 || |||| | || || || |||||| ||| || | ||||| ||| || Sbjct 17919558 GAAATTAACTACTACCCAGTGCCTGAAGCGGAGAAGTCCAACAAGCGCCACAGGCCGATC 17919617 Query 123912 GGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGC 123971 ||| | ||| | || || ||||| ||||| || | | ||||| |||| ||||||| Sbjct 17919618 GGAATCGGCGTCCAGGGTTTGGCAGACGCCTTCATCCTCATGCGCTACCCGTTCGAAAGC 17919677 Query 123972 GACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAG 124031 || || || |||| || | ||||| || || || || |||| ||| ||||| Sbjct 17919678 CCTGAGGCTCAGCTGCTGAACATTCAAATCTTTGAGACCATCTACTACGCCGCCCTGGAG 17919737 Query 124032 GCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCG 124091 ||||||||||| || || | |||| | ||||| | |||| ||| ||||| Sbjct 17919738 GCGAGCTGCGAGCTGGCTGCTGAGCTCGGCCCCTACGAGACGTACGAAGGCTCCCCGGTC 17919797 Query 124092 AGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGG 124151 ||| || || | ||||||||||||||| | || || || | || ||||||| Sbjct 17919798 AGCAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACGCCCACCGACCTGCTGGACTGG 17919857 Query 124152 AGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGT 124209 | || | || | | | |||| | |||||| || | ||| ||| || |||| Sbjct 17919858 AAGGTCCTGAAGGA--GAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCC 17919915 Query 124210 ACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGA 124261 ||||| ||||| |||| || || || | || |||||||| ||| |||| Sbjct 17919916 CGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGA 17919967 >seq5 Length=28395245 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || ||||| ||||| |||||||||||||| ||||||||||||||||| | ||| ||| Sbjct 12623735 GAGACCGGTACGCCATACATGCTCTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAG 12623676 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 || |||| || || |||| || ||||| ||| | || ||| | || |||| Sbjct 12623675 AATCTGGGCACCATCAAATCCAGCAATCTGTGCACGGAGATTGTAGAGTACA 12623624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003058749000