Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 172 7e-38 seq5 98.7 1e-15 seq8 84.2 3e-11 >seq4 Length=27622843 Score = 172 bits (190), Expect = 7e-38 Identities = 837/1307 (64%), Gaps = 46/1307 (4%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | || | | |||| ||||| |||| ||| ||||| |||||| Sbjct 17919988 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 17919929 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || |||| || |||||||| | | || | || ||| Sbjct 17919928 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 17919869 Query 116023 TTGAGGGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAAC 116076 || ||| | | |||||| || | || || |||| | |||||||| || || Sbjct 17919868 TTCAGGACCTTCCAGTCCAGCAGGTCGGTGGGC---GTCTTC---TCCCACATGTCGTAC 17919815 Query 116077 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCC---CTCAACC 116133 |||||||| || | | | || || || || | ||||| || ||||| |||| | Sbjct 17919814 TGGAGGATGCCCTTGCTGACCGGGGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCA 17919755 Query 116134 TCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA 116193 |||| ||| |||||||||| ||||| |||| || || |||||||| || || Sbjct 17919754 ---GCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATG 17919698 Query 116194 TTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCG 116253 |||| || ||||| | || |||| | || | || || | || || Sbjct 17919697 TTCAGCAGCTGAGCCTCAGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCC 17919638 Query 116254 AGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTC 116312 | ||| ||||| |||| || || || | || | | | || ||||| || || | || Sbjct 17919637 AAACCCTGGACGCCGATTCCGATCGGCCTGTGGCGCTTGTTGGACTTCTC---CGCT-TC 17919582 Query 116313 ---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT 116369 ||| || || | || | ||||||| | | || | |||||| || || || || Sbjct 17919581 AGGCACTGGGTAGTAGTTAATTTCGATAATCTTGTTCAAGTTTTTGACGATTACTTTGGT 17919522 Query 116370 GATTTCATGA-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAA 116428 | ||| || |||| | |||||| | || ||| |||| ||| | | Sbjct 17919521 CACAA-ATGCTAGTTTTTTAAAGTCAAAAGTCCG---CTCAGGGGTGACGTACATGTTGA 17919466 Query 116429 GGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTT 116488 | ||||| || |||||||||||||| | |||||| | |||||||| | |||| Sbjct 17919465 GCGCGATGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTT 17919406 Query 116489 CCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 116548 | || || | || || || |||||||||| |||| || || ||| |||| | Sbjct 17919405 CTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGC 17919346 Query 116549 ACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 116608 | || || ||||| ||||| || ||||| || || || || ||||||| || ||| || | Sbjct 17919345 AGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCGATAATGGCGT 17919286 Query 116609 TCCATACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTG 116667 ||| || | | | | || ||| | ||| | | ||| |||| ||| || | ||| Sbjct 17919285 GCCACACCTGCTGAGCCT-TCACCACGCGCTTGACCCTCCCTTCCTTCTCATATGTGGTG 17919227 Query 116668 TAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACA 116726 || || ||| ||||| || ||| |||| ||| ||||| || || | ||||| Sbjct 17919226 TAAAGCTTCTCGAACTCCTC-CCCCCAGCACTCGTCCAGCCCAGGGCACTCGTTCGGACA 17919168 Query 116727 GAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAG 116786 | |||||||| | ||| || | ||||||||| |||||||||||||| | Sbjct 17919167 CATCAGAGACCAGTCTGTGTTGCTCTCCACTCTCTTCATGAACAGGTCTGGGATCCACAT 17919108 Query 116787 CGCCGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCA 116845 || |||| || || | | | ||| || | | || || || || ||||| Sbjct 17919107 GGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTG-TTCTTCTTCAGCTCCA 17919049 Query 116846 AAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGAC 116905 | ||||| | | ||| |||||| || |||||||||| || | | | || || | Sbjct 17919048 AGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCAAACG-CTCCGGGCCTC 17918990 Query 116906 ----GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATG 116961 || |||||| || || | ||| || ||| | || | ||||| || | | Sbjct 17918989 TTGTTGCCTCCCTGGTCGACGTAGCGCGCAGTGTTGTTGTAGACTCTCAGCATGGGGACG 17918930 Query 116962 ATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGT 117019 | || | || | ||| || || || ||| ||| | | | | | ||||| | Sbjct 17918929 AGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATATA-GCTCCCCG-TCGATCTGATGCAGC 17918872 Query 117020 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGC 117079 || || ||||| ||||| ||| |||| ||||| | || |||| | | || || Sbjct 17918871 TGACCGCCACGCCAATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGT 17918812 Query 117080 CGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTG 117139 |||| || || ||||| ||| | || | |||| ||||||||||| |||| |||| Sbjct 17918811 CGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTG 17918752 Query 117140 GCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 |||| || || ||||||||||| || || | |||||| ||||| Sbjct 17918751 GCCTGTTGGTTCCCGCGTTGAAGAGCGTAGGGGAAGCGTGGGTGAAC 17918705 >seq5 Length=28395245 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| ||||||| | |||| ||||| |||| ||| ||||| ||||| Sbjct 12622170 TAGATGTTGCTGGTGTAGGGCTCAATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAA 12622229 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||||||||||| |||| ||| || ||||| Sbjct 12622230 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 12622261 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/126 (76%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 116473 GTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTT 116530 |||||||||| ||| ||||| |||| ||| || | | | |||||||||| |||| | Sbjct 12623623 GTGTACTCTACAATCTCCGTGCACAGATTGCTGGATT--TGATGGTGCCCAGATTCTGCT 12623680 Query 116531 GATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTT 116590 | || ||| |||| || || |||||||||||||| |||||||| || ||||| || | Sbjct 12623681 GGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTACCGGTCTCTGTCT 12623740 Query 116591 GGGACT 116596 | |||| Sbjct 12623741 GAGACT 12623746 >seq8 Length=22893611 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | ||| || || || |||||| ||| || ||||| || || | ||| | Sbjct 22892198 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTTT 22892139 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||| |||||| || || |||||||||||||| |||||||| Sbjct 22892138 TCAGCCAGAAGATCGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCAC 22892090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507008279000