Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 187 4e-42 seq5 95.1 2e-14 seq18 84.2 3e-11 >seq4 Length=27622843 Score = 187 bits (206), Expect = 4e-42 Identities = 517/774 (67%), Gaps = 24/774 (3%) Strand=Plus/Minus Query 204841 GGCGGCCAGATTGCACACCGCGGG-TCTGTGTGGCTCGCTCACCTCCACGATCTCGGTGC 204899 || ||||||||| |||||||| || || ||| | || || || || || |||| Sbjct 17919458 GGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTAC-TCAACTATTTCTGTGC 17919400 Query 204900 ACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGT 204959 | | ||| | || || | |||| || ||||||||| ||| | ||| |||| || Sbjct 17919399 AGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 17919340 Query 204960 CCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCGCAGAATGTGGGTCCAC 205018 | ||||||| |||| ||||| | ||| | || |||| || ||| | |||| | |||| Sbjct 17919339 CTTTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCG-ATAATGGCGTGCCAC 17919281 Query 205019 AATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAGACTCGTATTTTGTGTAC 205075 | | |||||| |||| |||| || | |||||| ||| ||| | ||||| Sbjct 17919280 ACCTGCTGAGCCTTCACCACGCGCTTGAC---CCTCCCTTCCTTCTCATATGTGGTGTAA 17919224 Query 205076 AGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTGGACATTTTTTGGGACAC 205132 ||| | | || || || | || |||||| |||| || || | || |||||| Sbjct 17919223 AGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCA---GCCCAGGGCACTCGTTCGGACAC 17919167 Query 205133 ATCAGAGACCACA-TCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAG 205191 ||||||||||| | || | ||| ||| |||| ||| |||||||| |||||||| Sbjct 17919166 ATCAGAGACCAGTCTGTGTTGCTCTC-CACTCTCTTCATGAACAGGTCTGGGATCCACAT 17919108 Query 205192 GCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAG 205251 | |||| || || || | |||||| | || | ||| |||||| |||| |||| Sbjct 17919107 GGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAA 17919048 Query 205252 CCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCT 205310 ||| | | | ||| |||||| ||||| | ||| ||| | || || ||||||| Sbjct 17919047 G-AAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCT 17918989 Query 205311 TGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCA 205370 |||| || |||||||| || ||| | | |||| | |||| |||||| || || | Sbjct 17918988 TGTTGCCTCCCTGGTCGACGTAGCGCGCAGTGTTGTTGTAGACTCTCAGCATGGGGACGA 17918929 Query 205371 GACCGTTGGCGGTCCCGTTCGTGCTGTTGAT-GGCCGAGCCTTCAGCCCTCACGTTGGAG 205429 | ||||||| | | ||||| |||| | ||| | || || | || | | | | Sbjct 17918928 GCCCGTTGGAGTTGCCGTTGGTGCCGGCGATATAGCTCCCCGTC-GATCTGATGCAGCTG 17918870 Query 205430 ATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGCAGAGTGCTG 205489 | ||| ||||||| || || | |||||| ||| |||| |||| | ||| ||| | Sbjct 17918869 ACCGCCACGCCAATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCG 17918810 Query 205490 TAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCT-TGGC 205548 || |||||| ||||| ||||| || | | ||| |||| | ||||| |||| Sbjct 17918809 TAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGC 17918750 Query 205549 AAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTC 205602 |||||| ||||||| ||||||||| ||| |||||| |||| | |||||| Sbjct 17918749 -CTGTTGGTTCCCGCGTTGAAGAGCGTAGGGGAAGCGTGGGTGAACCACTTCTC 17918697 Score = 183 bits (202), Expect = 5e-41 Identities = 352/513 (69%), Gaps = 7/513 (1%) Strand=Plus/Minus Query 204100 CCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158 ||||| | || ||||||| || ||||| || || ||||||| | ||||| || Sbjct 17920116 CCTGAATGGACCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGTCCTC 17920057 Query 204159 ACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCC 204218 | |||| || | |||||| || || | ||||||||| ||||| || ||||||| Sbjct 17920056 TCTCCGTCAGGTCTTTGAGCAGGTGAGGATTCACGATCTGAAACTCTCCAGAGAGCACCC 17919997 Query 204219 CTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAG 204278 |||||| | | |||| ||||| | | ||||| | |||||||||||| | ||||| | Sbjct 17919996 TGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGG 17919937 Query 204279 CGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGA 204338 ||||| |||||||||||| || ||||| |||||| ||| | ||| |||| || || Sbjct 17919936 CGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGA 17919877 Query 204339 CCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGA 204398 | | |||||| ||||||| ||| | |||| || ||||||||||| Sbjct 17919876 TCTTCTCCTTCAGGACCTTCCAGTCCAGCAGGTCGGTGGGCGTCTTCTCCCACATGTCGT 17919817 Query 204399 ACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTCT 204457 |||| | |||||| | ||||| ||| ||| | ||||||| || ||| || ||| Sbjct 17919816 ACTGGAGGATGCCCTTGCTGACCGGGGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCA 17919758 Query 204458 TCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACG 204517 | ||||||| ||| || ||| |||| ||||| |||||||||||||| |||| | Sbjct 17919757 GCAGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATG 17919698 Query 204518 TTTA--ATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCG 204575 || | | ||| ||||| | | || |||| | || | | || |||| | Sbjct 17919697 TTCAGCAGCTG--AGCCTCAGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTG 17919640 Query 204576 CCAAGCCCTGCACTCCGATTCCCAACGGTCTGT 204608 |||| ||||| || |||||||| | ||| |||| Sbjct 17919639 CCAAACCCTGGACGCCGATTCCGATCGGCCTGT 17919607 Score = 120 bits (132), Expect = 5e-22 Identities = 115/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | ||||||| | |||||||| |||||| || || ||||| ||||| Sbjct 17920911 CCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCCGCGATGTGGATGTT 17920852 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 ||| |||||||| ||||||||| |||||||| || ||||| ||||| |||| | ||||| Sbjct 17920851 CAGGGACTGGCTCTGGTCGATG-AAGGCGCCGCGGTCTGCAGCCATCTTGAGTACGGTCT 17920793 Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060 |||| || || |||||||| || || Sbjct 17920792 TCTGGGAGATTTCCCACACGGTTTT 17920768 >seq5 Length=28395245 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| || || | ||||||| | |||||||| ||| || || || || || || Sbjct 12621566 CTTCCAACCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTTGGTTCAGCAATATGGAT 12621625 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGT 204033 ||| || ||||| || ||||| ||| ||| | |||||||| ||||| |||| ||||| Sbjct 12621626 GTTTAGGGACTGACTCTGGTCAATGTAAGCACCACGATCTGCTGCCATCTTGAGGATGGT 12621685 Query 204034 CTTCTGCGAAATCTCCCACACCGTCTT 204060 |||||| || || |||||||| || || Sbjct 12621686 CTTCTGGGAGATTTCCCACACAGTTTT 12621712 Score = 93.3 bits (102), Expect = 7e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 || ||| |||||| ||||| || || |||| |||||| | | |||| ||||| | || | Sbjct 12622132 TGCTGACCTGAAACTCTCCCGAGAGTACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCT 12622191 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 | | | |||||||||||| | ||||| || ||| || ||||||||||| |||| || Sbjct 12622192 CAATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATGGGGGCCAAGA 12622251 Query 204309 GCAGGGAGTTGCGCACACC 204327 |||| ||| | |||||| Sbjct 12622252 GCAGACTGTTCCTCACACC 12622270 >seq18 Length=27569954 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 200181 TTTTGTTTACAGACTGGTTCCGGAGTACATGGACCCTGCAGGATGACCCTTGTAAAAAAT 200240 |||| || |||| |||||| | || || ||||| || || |||||||||||||| |||| Sbjct 13246741 TTTTTCTTGCAGAGTGGTTCAGAAGCACCTGGACTCTTCAAGATGACCCTTGTAAGAAAT 13246682 Query 200241 ATCACGAAGTGCTCATTATCAACCCCGTTCTATTAGTCCCTCCAACCAAGG 200291 | | ||| | ||||| ||||||| |||| | || ||||| ||||||| Sbjct 13246681 ACTATGAACTTCTCATGGTCAACCCTATTCTGCTGGTACCTCCTACCAAGG 13246631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154951514000